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34 Open 46 Closed
34 Open 46 Closed
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Issues list

tax_glom add sample names
#75 opened Jun 16, 2022 by g-antonello
2
Add support for groups in mutate and transmute methods enhancement New feature or request
#74 opened Jun 29, 2021 by mikemc
Add method to facilitate using dplyr::count on tax tables and sample data enhancement New feature or request
#73 opened Jun 23, 2021 by mikemc v0.6
Case where merge_samples2() fails on creating new sample data aggregation bug Something isn't working
#71 opened Jun 18, 2021 by mikemc
2
Allow tax_glom() to accept unquoted rank names aggregation enhancement New feature or request
#70 opened Jun 18, 2021 by mikemc
Add a function to convert a melted data frame to a phyloseq object enhancement New feature or request
#67 opened Jun 3, 2021 by mikemc
2
Add version of sweep() that works on phyloseq and otu_table objects enhancement New feature or request transformation
#62 opened May 26, 2021 by mikemc
Allow criteria other than abundance when merging taxa aggregation enhancement New feature or request
#58 opened Jan 13, 2021 by bobthacker
2
Revamp constructors enhancement New feature or request
#57 opened Oct 16, 2020 by mikemc
Counting and formatting errors in print() output bug Something isn't working
#56 opened Oct 14, 2020 by mikemc
Replace rlang::scoped_options() with function from withr in tibble_print()
#55 opened Oct 11, 2020 by mikemc v0.6
Add checks to subset_*() commands enhancement New feature or request question Further information is requested
#54 opened Sep 12, 2020 by mikemc
Apply consistent rules about allowed sample names? bug Something isn't working question Further information is requested
#53 opened Sep 11, 2020 by mikemc
2
Add better handling of name conflicts in internal methods bug Something isn't working
#51 opened Sep 9, 2020 by mikemc
2
Create additional otu-table transformation methods enhancement New feature or request transformation
#49 opened Sep 8, 2020 by mikemc
merge_samples2() - Add column to sample data with number of merged samples aggregation enhancement New feature or request
#48 opened Sep 8, 2020 by mikemc
Allow definition of new names in merge_taxa_vec() aggregation enhancement New feature or request
#46 opened Aug 17, 2020 by mikemc
Adjust otu-table sample names to match sample data when subsetting duplicate samples enhancement New feature or request question Further information is requested
#45 opened Jul 23, 2020 by mikemc
Add tax_glom() option to merge NA taxa into an "Unknown" category enhancement New feature or request
#44 opened Jul 13, 2020 by mikemc
Improve error messages when an operation results in 0 samples or taxa enhancement New feature or request
#39 opened Jul 6, 2020 by mikemc
Add optional parameter to psmelt() to set column names enhancement New feature or request
#37 opened Jul 4, 2020 by mikemc
Give messages when samples or taxa are dropped enhancement New feature or request
#36 opened Jul 3, 2020 by mikemc
1
Give message/warning when subset_*() functions drop items due to NAs enhancement New feature or request
#35 opened Jul 1, 2020 by mikemc
Change prune_taxa() to never change taxon order bug Something isn't working enhancement New feature or request
#34 opened Jun 25, 2020 by mikemc
Check that (optional) named arguments are used in function calls enhancement New feature or request
#32 opened May 29, 2020 by mikemc
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