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Another case is when phyloseq() is called - currently at error is given only if no samples or taxa match. However, to improve this and some of the cases above would require rewriting core parts of phyloseq.
Examples of cases where it seems worth it to
message()
the user when samples or taxa are dropped includesample_data(ps) <-
can silently drop samplestax_table()
,otu_table()
, etctax_glom()
with default params will drop taxa withbad_empty
value at that rankThe text was updated successfully, but these errors were encountered: