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18 Open 102 Closed
18 Open 102 Closed
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Issues list

investigate obitools4 enhancement New feature or request
#127 opened Nov 5, 2024 by mhoban
Allow standalone taxonomic assignment via insect enhancement New feature or request
#118 opened Oct 21, 2024 by mhoban
Implement unit testing / continuous integration enhancement New feature or request
#116 opened Oct 19, 2024 by mhoban
Add e-value as threshold option for collapse_taxonomy
#108 opened Oct 12, 2024 by mhoban
Restructure some processes
#107 opened Oct 10, 2024 by mhoban
Add average percent ID match to LCA table
#105 opened Oct 3, 2024 by mhoban
1
Allow lists of reads in file?
#100 opened Sep 25, 2024 by mhoban
1
Unify taxonomy archive types
#88 opened Aug 19, 2024 by mhoban
1
Add taxid of last non-"dropped" taxon to collapsed taxonomy
#83 opened Aug 15, 2024 by mhoban
3
Add option to cleanup intermediate files to reduce storage enhancement New feature or request
#78 opened Aug 7, 2024 by mhoban
lulu probably not behaving properly since major updates between 12/23 and 3/24
#72 opened Jul 12, 2024 by cajwalsh
5
--standalone-taxonomy behavior with --zotu-table, finalize, and --insect
#69 opened Jul 4, 2024 by cajwalsh
1
Add option to save current configuration as params file enhancement New feature or request
#67 opened May 29, 2024 by mhoban
1
Save settings in yaml/json format enhancement New feature or request
#66 opened May 29, 2024 by mhoban
3
taxonomy qcov 100 may not (or not always) be returning qcov 100
#49 opened Jan 17, 2024 by cajwalsh
Add DADA2 as a denoising option
#34 opened Oct 17, 2023 by mhoban
1
Look into parallel blasting
#15 opened Jul 21, 2023 by mhoban
1
Add WoRMS name validation enhancement New feature or request
#1 opened Jul 19, 2023 by mhoban
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