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Allow standalone taxonomic assignment via insect #118

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mhoban opened this issue Oct 21, 2024 · 0 comments
Open

Allow standalone taxonomic assignment via insect #118

mhoban opened this issue Oct 21, 2024 · 0 comments
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enhancement New feature or request

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@mhoban
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mhoban commented Oct 21, 2024

Spun off from #69, a feature request from @cajwalsh.

Expand --standalone-taxonomy to do insect assignment too. The way this will probably work is that the --standalone-taxonomy option will now get an argument, with the acceptable values of lca and/or insect. The pipeline will then just do whichever ones are asked for. If you want to run both, make the option a list in a params file.

Although I suppose we could just do --standalone-lca and --standalone-insect (perhaps as aliases for --standalone-taxonomy lca/insect?)

@mhoban mhoban added the enhancement New feature or request label Oct 21, 2024
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