Skip to content

Neuroimaging analysis and visualization suite

License

Notifications You must be signed in to change notification settings

ayendiki/freesurfer

This branch is 3094 commits behind freesurfer/freesurfer:dev.

Folders and files

NameName
Last commit message
Last commit date
Feb 6, 2018
Feb 6, 2018
Jan 17, 2022
Oct 30, 2020
Jun 17, 2021
Dec 22, 2020
Apr 25, 2020
Feb 9, 2022
Dec 22, 2020
Jan 7, 2021
Feb 5, 2021
Feb 19, 2021
Mar 9, 2021
Dec 22, 2019
Mar 27, 2019
Jan 8, 2019
Feb 9, 2022
Mar 9, 2021
Mar 9, 2021
Feb 21, 2017
Sep 13, 2019
Jan 17, 2019
Nov 25, 2020
Jan 25, 2022
Nov 29, 2021
Mar 9, 2021
Feb 2, 2022
Mar 22, 2021
Mar 22, 2021
Mar 22, 2021
Mar 9, 2021
Jan 29, 2019
Mar 22, 2021
Mar 22, 2021
Feb 16, 2022
Feb 2, 2022
Mar 9, 2021
Jan 17, 2019
Mar 30, 2020
Feb 25, 2022
Mar 22, 2021
Mar 22, 2021
Mar 9, 2021
Mar 22, 2021
Jan 26, 2022
Mar 9, 2021
Mar 9, 2021
Mar 22, 2021
Nov 29, 2021
Feb 6, 2022
Mar 9, 2021
Mar 9, 2021
Mar 22, 2021
May 25, 2021
Apr 14, 2020
Mar 9, 2021
Dec 6, 2021
Mar 9, 2021
Mar 22, 2021
Mar 9, 2021
Mar 22, 2021
Jan 13, 2022
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Jul 22, 2021
Feb 22, 2022
Nov 3, 2021
Sep 18, 2020
Mar 9, 2021
Nov 8, 2021
Mar 9, 2021
Jun 1, 2021
Sep 8, 2021
Apr 21, 2020
Mar 9, 2021
Mar 22, 2021
Mar 9, 2021
Apr 1, 2021
Feb 17, 2020
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Feb 4, 2022
Mar 9, 2021
Mar 22, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Dec 7, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Sep 17, 2021
Mar 9, 2021
Mar 9, 2021
Feb 22, 2022
Feb 18, 2022
Feb 18, 2022
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Apr 7, 2021
Mar 9, 2021
Dec 6, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Feb 9, 2022
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Dec 6, 2021
Mar 9, 2021
Mar 9, 2021
Jun 1, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Dec 6, 2021
Apr 9, 2021
Mar 9, 2021
Mar 9, 2021
Oct 21, 2021
Mar 9, 2021
Oct 21, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Oct 21, 2021
Mar 9, 2021
Mar 9, 2021
Apr 3, 2020
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Apr 7, 2021
Mar 9, 2021
Dec 6, 2021
Dec 6, 2021
Mar 9, 2021
Jan 15, 2022
Mar 9, 2021
Apr 3, 2020
Jan 3, 2022
Mar 9, 2021
Apr 21, 2021
Nov 5, 2021
Mar 9, 2021
Jun 24, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Feb 21, 2022
Mar 9, 2021
Oct 13, 2021
Dec 25, 2021
Mar 9, 2021
Dec 23, 2021
Nov 5, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Apr 7, 2021
Apr 7, 2021
Jan 25, 2022
Jan 26, 2022
Dec 6, 2021
Mar 9, 2021
Jan 18, 2022
Mar 9, 2021
Oct 21, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 3, 2020
Mar 9, 2021
Feb 21, 2022
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Sep 7, 2021
Feb 27, 2019
Mar 22, 2021
Mar 9, 2021
Apr 3, 2020
Apr 7, 2021
Oct 25, 2021
Mar 9, 2021
Apr 7, 2021
Apr 7, 2021
Mar 9, 2021
Apr 7, 2021
Apr 7, 2021
Mar 9, 2021
Apr 7, 2021
Apr 7, 2021
Mar 22, 2021
Feb 21, 2022
Mar 9, 2021
Apr 16, 2021
Sep 20, 2021
Mar 9, 2021
Mar 9, 2021
Oct 13, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Mar 22, 2021
Mar 9, 2021
Mar 9, 2021
Jan 14, 2022
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Apr 7, 2021
Feb 17, 2020
Mar 9, 2021
Jun 4, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Apr 7, 2021
Apr 7, 2021
Sep 8, 2021
Mar 9, 2021
Apr 7, 2021
Feb 6, 2022
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Apr 7, 2021
Apr 7, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
May 23, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Apr 7, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Jan 17, 2019
Apr 7, 2021
Mar 9, 2021
Dec 21, 2021
Dec 6, 2021
Mar 9, 2021
Feb 23, 2022
May 5, 2021
Mar 9, 2021
Mar 9, 2021
Apr 7, 2021
Jan 8, 2019
Jan 7, 2021
Feb 15, 2022
Feb 21, 2022
Mar 30, 2020
Feb 2, 2022
Mar 9, 2021
Mar 9, 2021
Feb 15, 2022
Oct 21, 2021
Mar 9, 2021
Jun 25, 2021
Mar 9, 2021
Mar 9, 2021
Mar 9, 2021
Sep 27, 2021
Jun 23, 2021
Apr 7, 2021
Feb 18, 2022
Sep 13, 2019
Jun 22, 2021
Oct 11, 2017
Sep 20, 2020
Feb 6, 2018
Feb 5, 2021
Apr 21, 2021
Feb 25, 2022
Jul 17, 2019
Jul 17, 2019
Sep 2, 2021
Mar 3, 2010
Jan 17, 2019
Jul 17, 2019
Jul 2, 2019
Dec 20, 2020

Repository files navigation

An open-source software suite for processing human brain MRI

Introduction

FreeSurfer is a software package for the analysis and visualization of neuroimaging data from cross-sectional and longitudinal studies. It is developed by the Laboratory for Computational Neuroimaging at the Martinos Center for Biomedical Imaging.

FreeSurfer provides full processing streams for structural and functional MRI and includes tools for linear and nonlinear registration, cortical and subcortical segmentation, cortical surface reconstruction, statistical analysis of group morphometry, diffusion MRI, PET analysis, and much more. It is also the structural MRI analysis software of choice for the Human Connectome Project.

For expansive documentation on using and understanding FreeSurfer tools, please visit the FS Wiki.

Developer

Please review the contribution guidelines and visit our build guide for step-by-step instructions on configuring and building the source code.

Support

If you've encountered an issue or have a question about using FreeSurfer, follow these steps to get help:

  1. Search the archives: It is highly likely that someone else has run into the same problem before you. The fastest way to get answers is to search the archives of our mailing list.

  2. Ask a question: Subscribe to the mailing list and start a discussion!

If you've found a bug in the software, feel free to open an issue or submit a patch after reviewing our CONTRIBUTING.md documentation.

License

Terms and conditions for use, reproduction, distribution and contribution are found in LICENSE.txt.

About

Neuroimaging analysis and visualization suite

Resources

License

Code of conduct

Stars

Watchers

Forks

Packages

No packages published

Languages

  • C++ 57.1%
  • C 20.9%
  • Shell 8.2%
  • MATLAB 6.2%
  • Python 4.7%
  • Tcl 1.8%
  • Other 1.1%