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  1. CIE-R-Package CIE-R-Package Public

    Causal Inference and Directional Enrichment Methods on Biological Networks

    R 7 3

  2. nlbayes-python nlbayes-python Public

    Python package for NLBayes, an active TF inference algorithm based on noisy logic bayesian models

    Jupyter Notebook 3

  3. ChIPMiner ChIPMiner Public

    A Text Mining System for Transcription Factor-Gene Direction Extraction

    Python 2

  4. GlassoFastR GlassoFastR Public

    parallel implementation of graphical Lasso with Cholesky decomposition for estimating the inverse of the covariance matrix.

    C 1 1

  5. gbnet gbnet Public

    A Bayesian Networks approach for infering active Transcription Factors using logic models of transcriptional regulation

    C++ 1 1

  6. ToxoplasmaGondii ToxoplasmaGondii Public

    R 1

Repositories

Showing 10 of 43 repositories
  • nlbayes-r Public

    Noisy Logic Bayesian models for active TF inference

    umbibio/nlbayes-r’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jan 22, 2025
  • nlbayes-python Public

    Python package for NLBayes, an active TF inference algorithm based on noisy logic bayesian models

    umbibio/nlbayes-python’s past year of commit activity
    Jupyter Notebook 3 MIT 0 0 0 Updated Jan 22, 2025
  • nlbayes-core Public

    core C++ implementation of the NLBayes library

    umbibio/nlbayes-core’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Jan 22, 2025
  • umbibio/essentiality-dash-app’s past year of commit activity
    Python 0 2 0 0 Updated Nov 29, 2024
  • coldShock Public

    Babesia Cold Shock

    umbibio/coldShock’s past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 30, 2024
  • PkHessentialome Public Forked from sidaye001/PkHessentialome

    This repository is to show all the analysis in Plasmodium knowlesi H strain essentialome and drug perturbations

    umbibio/PkHessentialome’s past year of commit activity
    R 0 1 0 0 Updated Sep 28, 2024
  • ProstaticFibrosisCeRNA Public

    ceRNA network induced by IL4/IL13 in prostatic fibrosis

    umbibio/ProstaticFibrosisCeRNA’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jun 4, 2024
  • umbibio/scToxoplasmaCDC’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated May 17, 2024
  • DeepToxo Public

    Deep sequenced and multiom T. gondii scRNA/scATAC

    umbibio/DeepToxo’s past year of commit activity
    R 0 MIT 0 0 0 Updated Nov 5, 2023
  • umbibio/Toxo_lab_adapt’s past year of commit activity
    R 0 0 0 0 Updated Oct 12, 2023

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