Repositories list

• nlbayes-r

  Public
  Noisy Logic Bayesian models for active TF inference

  C++

  •

  MIT License

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• nlbayes-python

  Public
  Python package for NLBayes, an active TF inference algorithm based on noisy logic bayesian models

  Jupyter Notebook

  •

  MIT License

  •0•3•0•0•Updated Jan 22, 2025Jan 22, 2025

• nlbayes-core

  Public
  core C++ implementation of the NLBayes library

  C++

  •

  MIT License

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• essentiality-dash-app

  Public
  Python

  •2•0•0•0•Updated Nov 29, 2024Nov 29, 2024

• coldShock

  Public
  Babesia Cold Shock

  R

  •

  MIT License

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• PkHessentialome

  Public
  This repository is to show all the analysis in Plasmodium knowlesi H strain essentialome and drug perturbations

  R

  •1•0•0•0•Updated Sep 28, 2024Sep 28, 2024

• ProstaticFibrosisCeRNA

  Public
  ceRNA network induced by IL4/IL13 in prostatic fibrosis

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

• scToxoplasmaCDC

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated May 17, 2024May 17, 2024

• DeepToxo

  Public
  Deep sequenced and multiom T. gondii scRNA/scATAC

  R

  •

  MIT License

  •0•0•0•0•Updated Nov 5, 2023Nov 5, 2023

• Toxo_lab_adapt

  Public
  R

  •0•0•0•0•Updated Oct 12, 2023Oct 12, 2023

• toxosc-dash-app

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Oct 7, 2023Oct 7, 2023

• CIE-R-Package

  Public
  Causal Inference and Directional Enrichment Methods on Biological Networks

  R

  •3•7•1•0•Updated Sep 25, 2023Sep 25, 2023

• Toxoplasma_CDC

  Public
  R

  •0•0•0•0•Updated Jul 6, 2023Jul 6, 2023

• PfalciparumGametocyte

  Public
  R

  •0•0•0•0•Updated Jun 21, 2023Jun 21, 2023

• scMouseTumor

  Public
  Analysis of single cell mouse data

  R

  •0•0•0•0•Updated May 24, 2023May 24, 2023

• nlbayes-app

  Public
  Python

  •0•0•0•0•Updated May 9, 2023May 9, 2023

• Gene-Scope-X

  Public
  GeneScopeX is a web application that provides a comprehensive and user-friendly interface for analyzing single-cell gene expression data using the scanpy library.

  Python

  •0•0•0•0•Updated May 4, 2023May 4, 2023

• toxo_cdc2.0

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Mar 27, 2023Mar 27, 2023

• babesia_dash_app

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 7, 2023Mar 7, 2023

• Application-for-Single-Cell-RNA-Seqencing

  Public
  HTML

  •0•0•0•0•Updated Mar 1, 2023Mar 1, 2023

• Babesia_time_course

  Public
  R

  •1•0•0•0•Updated Feb 23, 2023Feb 23, 2023

• toxo_cdc

  Public
  T. gondii cell division cycle

  R

  •

  MIT License

  •0•0•0•0•Updated Jan 4, 2023Jan 4, 2023

• compScBdTgPb

  Public
  Comparative Study of Parasite Species Transcriptom

  HTML

  •

  MIT License

  •1•0•0•0•Updated Sep 14, 2022Sep 14, 2022

• scBabesiaAtlases

  Public
  R

  •1•0•0•0•Updated Sep 2, 2022Sep 2, 2022

• Toxo_preprocessing

  Public
  ## Toxoplasma Gondii Virulence of the parasite Toxoplasma Gondii depends on multiple factors that are packed to specific organelles. Although virulence factor expression is tightly regulated, the molecular mechanism controlling their regulation has been poorly understood. In this project we are taking the advantage of several computational appro…

  R

  •0•0•0•0•Updated Jun 29, 2022Jun 29, 2022

• SN_Toxo_ExpressionProfiler

  Public
  Shiny App for S. Neurona, T. Gondii, and P. Berghei comparative transcriptomics

  R

  •0•0•0•0•Updated Jun 16, 2022Jun 16, 2022

• ToxoplasmaGondii

  Public
  R

  •0•1•0•0•Updated Jun 14, 2022Jun 14, 2022

• scClock

  Public
  R

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  MIT License

  •0•1•0•0•Updated Jan 18, 2022Jan 18, 2022

• ConvNNet4TEM

  Public
  Semantic Segmentation for TEM images of biological samples

  Python

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  MIT License

  •0•0•0•0•Updated Oct 22, 2021Oct 22, 2021

• gbnet

  Public
  A Bayesian Networks approach for infering active Transcription Factors using logic models of transcriptional regulation

  C++

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  MIT License

  •1•1•0•0•Updated Oct 12, 2021Oct 12, 2021