dsUpload 5.1.3

Fixes

• Added download.method to ds.upload()

What's Changed

• fix: download method by @timcadman in #131

New Contributors

• @timcadman made their first contribution in #131

Full Changelog: 5.0.3...5.1.3

dsUpload 5.0.3

Fixes

• Refactor/remove beta dictionary functions and add tests

What's Changed

• Remove functions and add tests by @erikzwart in #127
• Release 5.0.3 by @erikzwart in #129

Full Changelog: 5.0.2...5.0.3

dsUpload 4.7.2

Fixes

du.upload() includes the cohort_id(s) of dfbc, elspac, genrnext and pcl (Piccolipiù)

Support boolean as valueType in dictionaries

dsUpload 5.0.2

Fixes

du.upload() includes the cohort_id(s) of dfbc, elspac, genrnext and pcl (Piccolipiù)

What's Changed

• Chore/release 5.0.2 by @erikzwart in #126

Full Changelog: 5.0.1...5.0.2

dsUpload 5.0.1

Fixes

The (Athlete) demo set has been updated to be compatible with Armadillo 3 and can be found in the folder /ds-upload/inst/examples/data/demo/

What's Changed

• update docs upload to armadillo 2/3 by @erikzwart in #123
• Fix/athlete demo by @erikzwart in #124
• Chore/release 5.0.1 by @erikzwart in #125

Full Changelog: 5.0.0...5.0.1

dsUpload 5.0.0

Breaking

DsUpload version 5.x is updated to be compatible with Armadillo 3
This means that older versions of dsUpload are incompatible with Armadillo 3 and older versions of Armadillo are incompatible with dsUpload 5.x. Versions to use:

Armadillo version	dsUpload version
2.x	4.7.1
3.x	5.x

For opal, we recommend using the newest version of dsUpload to make sure you are up to date with all new features and bugfixes.

dsUpload 4.7.1

Features

Updated README to explain Armadillo 2 users how to update/install dsUpload.

dsUpload Version 4.7.x is compatible with Armadillo 2. When installing this version of dsUpload, the install.packages command might install the newest version (incompatible) of MolgenisArmadillo.

Run these commands (Rstudio) to install the correct version of MolgenisArmadillo:

Install devtools:

install.packages("devtools")

Load devtools and install ds-upload 4.7.1

library(devtools)

devtools::install_github("lifecycle-project/[email protected]")

You will get the following error message

namespace ‘MolgenisArmadillo’ 2.0.0 is being loaded, but == 1.1.3 is required

Next you need to remove MolgenisArmadillo

unloadNamespace("MolgenisArmadillo")

remove.packages("MolgenisArmadillo")

You might have to install these additional packages

install.packages(c("aws.iam", "aws.s3"))

Next we install a previous version of MolgenisArmadillo 1.1.3

packageurl <- "https://cran.r-project.org/src/contrib/Archive/MolgenisArmadillo/MolgenisArmadillo_1.1.3.tar.gz"

install.packages(packageurl, repos=NULL, type="source")

Now we (again) install dsUpload 4.7.1

devtools::install_github("lifecycle-project/[email protected]")

Make sure you do NOT update MolgenisArmadillo to another version then 1.1.3, select option 3

Downloading GitHub repo lifecycle-project/[email protected]
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?

1: All                                 
2: CRAN packages only                  
3: None                                
4: MolgenisA... (1.1.3 -> 2.0.0) [CRAN]

Enter one or more numbers, or an empty line to skip updates: 3

After that you should be able to load dsUpload without any problems.

library(dsUpload)

If you are asked to update MolgenisArmadillo to version 2.0.x please skip,
this in order for dsUpload 4.7.x to work with Armadillo 2.

What's Changed

• chore: freeze versions for armadillo 2 and update docs by @marikaris in #120

Full Changelog: 4.7.0...4.7.1

dsUpload 4.7.0

Features

Removed hard coded dictionary types and versions

It is no longer necessary to hard code newly added dsDictionaries in dsUpload.
Users don’t need to define dict_version in du.upload, if the option is left empty du.upload will use the latest version.

dsUpload 4.6.2

Features

• Added support for outcome_ath dictionaries, use dict_kind = 'outcome_ath' in du.upload.

dsUpload 4.6.1

Bugfixes

• if yearly, trimester or monthly data was missing dsUpload failed to process the data that was available.