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Sort bowtie2 outputs for reproducibility (#365) Integration Tests #2015: Commit a19202b pushed by rzlim08
May 24, 2024 16:50 18m 53s main
main
May 24, 2024 16:50 18m 53s
add multithreading to sort Integration Tests #2014: Commit 5aacdf9 pushed by rzlim08
May 23, 2024 22:51 37s rlim/reproducible-outputs-part-2
rlim/reproducible-outputs-part-2
May 23, 2024 22:51 37s
Bump jinja2 from 3.1.3 to 3.1.4 in /workflows/benchmark (#353) Integration Tests #2013: Commit 6ed1fc2 pushed by rzlim08
May 23, 2024 21:57 2m 39s main
main
May 23, 2024 21:57 2m 39s
--- (#363) Integration Tests #2012: Commit 57529d6 pushed by rzlim08
May 23, 2024 21:57 26s main
main
May 23, 2024 21:57 26s
linting Integration Tests #2011: Commit 1879135 pushed by rzlim08
May 23, 2024 21:35 20m 44s rlim/reproducible-outputs-part-2
rlim/reproducible-outputs-part-2
May 23, 2024 21:35 20m 44s
sort bowtie2 outputs for reproducibility Integration Tests #2010: Commit 1bb6a26 pushed by rzlim08
May 23, 2024 21:32 22m 17s rlim/reproducible-outputs-part-2
rlim/reproducible-outputs-part-2
May 23, 2024 21:32 22m 17s
Update Changelogs (#364) Integration Tests #2009: Commit 29224db pushed by lvreynoso
May 21, 2024 23:30 1m 24s main
main
May 21, 2024 23:30 1m 24s
Update short-read-mngs changelog Integration Tests #2008: Commit 021175d pushed by lvreynoso
May 21, 2024 23:27 22s lvreynoso/update_readmes
lvreynoso/update_readmes
May 21, 2024 23:27 22s
--- Integration Tests #2007: Commit c35ed87 pushed by dependabot bot
May 21, 2024 23:18 7m 44s dependabot/pip/requests-2.32.2
dependabot/pip/requests-2.32.2
May 21, 2024 23:18 7m 44s
Pin requests to 2.31.0 (#362) Integration Tests #2006: Commit eb1e2b6 pushed by lvreynoso
May 21, 2024 23:17 7m 55s main
main
May 21, 2024 23:17 7m 55s
Pin requests version in dev requirements Integration Tests #2005: Commit 293d289 pushed by lvreynoso
May 21, 2024 23:00 24s lvreynoso/pin_requests
lvreynoso/pin_requests
May 21, 2024 23:00 24s
Change pinned version for short-read-mngs, which is stuck in python 3.6 Integration Tests #2004: Commit dfd02b2 pushed by lvreynoso
May 21, 2024 22:39 10m 49s lvreynoso/pin_requests
lvreynoso/pin_requests
May 21, 2024 22:39 10m 49s
Pin requests to 2.31.0 Integration Tests #2003: Commit ae10711 pushed by lvreynoso
May 21, 2024 22:36 54s lvreynoso/pin_requests
lvreynoso/pin_requests
May 21, 2024 22:36 54s
Add sensitivity flag to DIAMOND in ONT/long-read workflow (#350) Integration Tests #2002: Commit dc1d276 pushed by lvreynoso
May 21, 2024 18:46 22m 7s main
main
May 21, 2024 18:46 22m 7s
--- Integration Tests #2001: Commit 43685de pushed by dependabot bot
May 21, 2024 05:43 5m 58s dependabot/pip/workflows/amr/requests-2.32.0
dependabot/pip/workflows/amr/requests-2.32.0
May 21, 2024 05:43 5m 58s
comments and s3 retries Integration Tests #2000: Commit cdfa51c pushed by morsecodist
May 21, 2024 00:56 1m 2s tmorse-reuse-alignment-chunks
tmorse-reuse-alignment-chunks
May 21, 2024 00:56 1m 2s
check for completed alignment chunks before dispatching them Integration Tests #1999: Commit 8e0524d pushed by morsecodist
May 20, 2024 19:58 22m 17s tmorse-reuse-alignment-chunks
tmorse-reuse-alignment-chunks
May 20, 2024 19:58 22m 17s
Output spades log in RunSpades (#359) Integration Tests #1998: Commit d70379d pushed by lvreynoso
May 13, 2024 20:21 40s main
main
May 13, 2024 20:21 40s
Output spades log in RunSpades Integration Tests #1997: Commit eec4665 pushed by lvreynoso
May 13, 2024 18:40 6m 2s lvreynoso/amr_emit_spades_log
lvreynoso/amr_emit_spades_log
May 13, 2024 18:40 6m 2s
Revert test release Integration Tests #1996: Commit d2065df pushed by lvreynoso
May 11, 2024 22:53 24s lvreynoso/diamond_sensitive
lvreynoso/diamond_sensitive
May 11, 2024 22:53 24s
Test release Integration Tests #1995: Commit 5206803 pushed by lvreynoso
May 10, 2024 04:21 24s lvreynoso/diamond_sensitive
lvreynoso/diamond_sensitive
May 10, 2024 04:21 24s
Fix test diamond_args value Integration Tests #1994: Commit 460624e pushed by lvreynoso
May 10, 2024 00:13 37s lvreynoso/diamond_sensitive
lvreynoso/diamond_sensitive
May 10, 2024 00:13 37s
Update required diamond wdl version Integration Tests #1993: Commit ab9da24 pushed by lvreynoso
May 9, 2024 23:33 47s lvreynoso/diamond_sensitive
lvreynoso/diamond_sensitive
May 9, 2024 23:33 47s
Parameterize aligner wdl versions (#356) Integration Tests #1992: Commit f75846b pushed by lvreynoso
May 9, 2024 22:36 30m 8s main
main
May 9, 2024 22:36 30m 8s
Allow multiple arguments to diamond blastx (#355) Integration Tests #1991: Commit d4e726b pushed by lvreynoso
May 9, 2024 22:36 28m 36s main
main
May 9, 2024 22:36 28m 36s