Output spades log in RunSpades (#359)

chanzuckerberg · May 13, 2024 · d70379d · d70379d
1 parent f75846b
commit d70379d
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/workflows/amr/run.wdl b/workflows/amr/run.wdl
@@ -641,6 +641,7 @@ task RunSpades {
     output { 
         File contigs = "spades/contigs.fasta"
         File? scaffolds = "spades/scaffolds.fasta"
+        File? spades_output_log = "spades/spades.log"
         File? failure_log = "spades_failure.json"
     }
     runtime {