Add parquet and sqlite support; add NNLS-based PEP and Q-value calculation #119
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Codecov Report
Attention: Patch coverage is 86.35671% with 179 lines in your changes missing coverage. Please review.
Please upload report for BASE (
main@af44229). Learn more about missing BASE report.
| Files with missing lines | Patch % | Lines |
|---|---|---|
| mokapot/tabular_data.py | 84.52% | 54 Missing |
| mokapot/parsers/pin_to_tsv.py | 39.34% | 37 Missing |
| mokapot/streaming.py | 87.50% | 20 Missing |
| mokapot/mokapot.py | 65.85% | 14 Missing |
| mokapot/brew_rollup.py | 92.69% | 13 Missing |
| mokapot/peps.py | 71.11% | 13 Missing |
| mokapot/dataset.py | 85.96% | 8 Missing |
| mokapot/confidence.py | 95.85% | 7 Missing |
| mokapot/confidence_writer.py | 88.67% | 6 Missing |
| mokapot/brew.py | 84.61% | 2 Missing |
| ... and 5 more |
Additional details and impacted files
@@ Coverage Diff @@
## main #119 +/- ##
=======================================
Coverage ? 84.60%
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Files ? 26
Lines ? 2949
Branches ? 0
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Hits ? 2495
Misses ? 454
Partials ? 0 ☔ View full report in Codecov by Sentry.
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