Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add parquet and sqlite support; add NNLS-based PEP and Q-value calculation #119

Merged
merged 269 commits into from
Sep 6, 2024

Merge pull request #46 from msaid-de/feature/pin-to-tsv-convert

55ad062
Select commit
Loading
Failed to load commit list.
Merged

Add parquet and sqlite support; add NNLS-based PEP and Q-value calculation #119

Merge pull request #46 from msaid-de/feature/pin-to-tsv-convert
55ad062
Select commit
Loading
Failed to load commit list.
Codecov / codecov/patch succeeded Sep 6, 2024 in 1s

No report found to compare against

View this Pull Request on Codecov

No report found to compare against

Annotations

Check warning on line 252 in mokapot/brew.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/brew.py#L252 

Added line #L252 was not covered by tests

Check warning on line 298 in mokapot/brew.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/brew.py#L298 

Added line #L298 was not covered by tests

Check warning on line 253 in mokapot/brew_rollup.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/brew_rollup.py#L251-L253 

Added lines #L251 - L253 were not covered by tests

Check warning on line 268 in mokapot/brew_rollup.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/brew_rollup.py#L267-L268 

Added lines #L267 - L268 were not covered by tests

Check warning on line 273 in mokapot/brew_rollup.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/brew_rollup.py#L272-L273 

Added lines #L272 - L273 were not covered by tests

Check warning on line 331 in mokapot/brew_rollup.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/brew_rollup.py#L331 

Added line #L331 was not covered by tests

Check warning on line 399 in mokapot/brew_rollup.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/brew_rollup.py#L399 

Added line #L399 was not covered by tests

Check warning on line 407 in mokapot/brew_rollup.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/brew_rollup.py#L407 

Added line #L407 was not covered by tests

Check warning on line 482 in mokapot/brew_rollup.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/brew_rollup.py#L480-L482 

Added lines #L480 - L482 were not covered by tests

Check warning on line 166 in mokapot/confidence.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence.py#L166 

Added line #L166 was not covered by tests

Check warning on line 193 in mokapot/confidence.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence.py#L193 

Added line #L193 was not covered by tests

Check warning on line 454 in mokapot/confidence.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence.py#L454 

Added line #L454 was not covered by tests

Check warning on line 732 in mokapot/confidence.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence.py#L732 

Added line #L732 was not covered by tests

Check warning on line 765 in mokapot/confidence.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence.py#L765 

Added line #L765 was not covered by tests

Check warning on line 850 in mokapot/confidence.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence.py#L849-L850 

Added lines #L849 - L850 were not covered by tests

Check warning on line 113 in mokapot/confidence_writer.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence_writer.py#L113 

Added line #L113 was not covered by tests

Check warning on line 120 in mokapot/confidence_writer.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence_writer.py#L119-L120 

Added lines #L119 - L120 were not covered by tests

Check warning on line 149 in mokapot/confidence_writer.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence_writer.py#L148-L149 

Added lines #L148 - L149 were not covered by tests

Check warning on line 151 in mokapot/confidence_writer.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/confidence_writer.py#L151 

Added line #L151 was not covered by tests

Check warning on line 18 in mokapot/config.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/config.py#L18 

Added line #L18 was not covered by tests

Check warning on line 266 in mokapot/dataset.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/dataset.py#L266 

Added line #L266 was not covered by tests

Check warning on line 502 in mokapot/dataset.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/dataset.py#L502 

Added line #L502 was not covered by tests

Check warning on line 552 in mokapot/dataset.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/dataset.py#L551-L552 

Added lines #L551 - L552 were not covered by tests

Check warning on line 616 in mokapot/dataset.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/dataset.py#L616 

Added line #L616 was not covered by tests

Check warning on line 625 in mokapot/dataset.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

mokapot/dataset.py#L623-L625 

Added lines #L623 - L625 were not covered by tests
View more details on Codecov