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veltenlab

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  1. rnamagnet rnamagnet Public

    R 25 8

  2. CloneTracer CloneTracer Public

    This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 10x libraries

    HTML 25 1

  3. mitoClone mitoClone Public

    R 12 4

  4. PrimerDesign PrimerDesign Public

    Package to design primers for MutaSeq and related methods

    R 11 3

  5. scTAM-seq-scripts scTAM-seq-scripts Public

    A collection of scripts for the analysis of data generated by single-cell targeted analysis of the methylome (scTAM-seq).

    R 3 3

  6. EPI-clone EPI-clone Public

    Vignettes to process data and generate figures for the EPI-clone paper

    HTML 3 1

Repositories

Showing 10 of 12 repositories
  • MPRA_prediction Public
    veltenlab/MPRA_prediction’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 17, 2025
  • EPI-clone Public

    Vignettes to process data and generate figures for the EPI-clone paper

    veltenlab/EPI-clone’s past year of commit activity
    HTML 3 MIT 1 0 0 Updated Dec 30, 2024
  • CloneTracer Public

    This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 10x libraries

    veltenlab/CloneTracer’s past year of commit activity
    HTML 25 MIT 1 0 0 Updated Oct 17, 2024
  • MPRAscripts Public

    Collection of snakemake pipelines and perl/Rmd scripts to process lentiMPRA data

    veltenlab/MPRAscripts’s past year of commit activity
    Perl 1 MIT 0 0 0 Updated Jun 3, 2024
  • EPI-CloneSelection Public

    This repository comprises code to select CpGs from bulk DNA methylation to be used for EPI-clone.

    veltenlab/EPI-CloneSelection’s past year of commit activity
    R 0 0 0 0 Updated Oct 5, 2023
  • CpGSelectionPipeline Public

    This repository comprises scripts to select putatively relevant sites for analysis with scTAM-seq.

    veltenlab/CpGSelectionPipeline’s past year of commit activity
    R 0 MIT 1 1 0 Updated Feb 28, 2023
  • scTAM-seq-scripts Public

    A collection of scripts for the analysis of data generated by single-cell targeted analysis of the methylome (scTAM-seq).

    veltenlab/scTAM-seq-scripts’s past year of commit activity
    R 3 MIT 3 0 0 Updated Nov 4, 2022
  • scvi-tools Public Forked from scverse/scvi-tools

    Deep probabilistic analysis of single-cell omics data

    veltenlab/scvi-tools’s past year of commit activity
    Python 0 BSD-3-Clause 377 0 0 Updated Sep 2, 2021
  • dca Public Forked from theislab/dca

    Deep count autoencoder for denoising scRNA-seq data

    veltenlab/dca’s past year of commit activity
    Python 0 Apache-2.0 72 0 0 Updated Aug 27, 2021
  • rnamagnet Public
    veltenlab/rnamagnet’s past year of commit activity
    R 25 8 3 1 Updated Jun 21, 2021
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