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    • Jupyter Notebook
      MIT License
      0000Updated Jan 17, 2025Jan 17, 2025
    • EPI-clone

      Public
      Vignettes to process data and generate figures for the EPI-clone paper
      HTML
      MIT License
      1300Updated Dec 30, 2024Dec 30, 2024
    • This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 10x libraries
      HTML
      MIT License
      12500Updated Oct 17, 2024Oct 17, 2024
    • Collection of snakemake pipelines and perl/Rmd scripts to process lentiMPRA data
      Perl
      MIT License
      0100Updated Jun 3, 2024Jun 3, 2024
    • This repository comprises code to select CpGs from bulk DNA methylation to be used for EPI-clone.
      R
      0000Updated Oct 5, 2023Oct 5, 2023
    • This repository comprises scripts to select putatively relevant sites for analysis with scTAM-seq.
      R
      MIT License
      1010Updated Feb 28, 2023Feb 28, 2023
    • A collection of scripts for the analysis of data generated by single-cell targeted analysis of the methylome (scTAM-seq).
      R
      MIT License
      3300Updated Nov 4, 2022Nov 4, 2022
    • Deep probabilistic analysis of single-cell omics data
      Python
      BSD 3-Clause "New" or "Revised" License
      372000Updated Sep 2, 2021Sep 2, 2021
    • dca

      Public
      Deep count autoencoder for denoising scRNA-seq data
      Python
      Apache License 2.0
      71000Updated Aug 27, 2021Aug 27, 2021
    • rnamagnet

      Public
      R
      82531Updated Jun 21, 2021Jun 21, 2021
    • mitoClone

      Public
      R
      41210Updated Apr 16, 2021Apr 16, 2021
    • Package to design primers for MutaSeq and related methods
      R
      31110Updated Jan 15, 2021Jan 15, 2021