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Added HPCC and Kraken Measurements
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 Cleaned up the source and script files. Added results from HPCC
Stampede and Kraken
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@philipmaechling
philipmaechling committed Mar 28, 2014
1 parent e03a123 commit 83bab9d
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Showing 69 changed files with 4,915 additions and 4 deletions.
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61 changes: 61 additions & 0 deletions hpcc/32x1_myri/7722008.hpc-pbs.hpcc.usc.edu.out
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----------------------------------------
Begin PBS Prologue Fri Mar 28 13:17:29 PDT 2014
Job ID: 7722008.hpc-pbs.hpcc.usc.edu
Username: maechlin
Group: scec
Name: run32x1_mn.sh
Queue: nbns_hiprio
Shared Access: no
All Cores: no
Nodes: hpc2245 hpc2246 hpc2247 hpc2248 hpc2249 hpc2250 hpc2251 hpc2252 hpc2253 hpc2254 hpc2255 hpc2256 hpc2257 hpc2258 hpc2259 hpc2260 hpc2261 hpc2262 hpc2263 hpc2264 hpc2265 hpc2266 hpc2267 hpc2268 hpc2269 hpc2270 hpc2271 hpc2272 hpc2273 hpc2274 hpc2275 hpc2276
PVFS: /scratch (1.3T), /staging (328T)
TMPDIR: /tmp/7722008.hpc-pbs.hpcc.usc.edu
End PBS Prologue Fri Mar 28 13:17:40 PDT 2014
----------------------------------------
hpc2245
hpc2246
hpc2247
hpc2248
hpc2249
hpc2250
hpc2251
hpc2252
hpc2253
hpc2254
hpc2255
hpc2256
hpc2257
hpc2258
hpc2259
hpc2260
hpc2261
hpc2262
hpc2263
hpc2264
hpc2265
hpc2266
hpc2267
hpc2268
hpc2269
hpc2270
hpc2271
hpc2272
hpc2273
hpc2274
hpc2275
hpc2276
hostname - hpc2245 reslen - 23
Total paths under test: 528
----------------------------------------
Begin PBS Epilogue Fri Mar 28 13:17:45 PDT 2014
Job ID: 7722008.hpc-pbs.hpcc.usc.edu
Username: maechlin
Group: scec
Job Name: run32x1_mn.sh
Session: 4328
Limits: neednodes=32:ppn=1:myri,nodes=32:ppn=1:myri,walltime=00:01:59
Resources: cput=00:00:01,mem=944kb,vmem=93652kb,walltime=00:00:05
Queue: nbns_hiprio
Shared Access: no
End PBS Epilogue Fri Mar 28 13:17:51 PDT 2014
----------------------------------------
531 changes: 531 additions & 0 deletions hpcc/32x1_myri/ammpi_32_64_100.dat
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32 changes: 32 additions & 0 deletions hpcc/32x1_myri/ammpi_32_64_100_comm.dat
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Original file line number Diff line number Diff line change
@@ -0,0 +1,32 @@
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32 changes: 32 additions & 0 deletions hpcc/32x1_myri/ammpi_32_64_100_var.dat
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Original file line number Diff line number Diff line change
@@ -0,0 +1,32 @@
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0.09, 0.08, 0.08, 0.09, 0.09, 0.06, 0.14, 0.07, 0.07, 0.08, 0.08, 0.1, 0.08, 0.08, 0.12, 0.09, 0.09, 0.09, 0.06, 0.07, 0.2, 0.09, 0.1, 0.0, 0.25, 0.1, 0.07, 0.12, 0.09, 0.07, 0.06, 0.09
0.14, 0.08, 0.09, 0.13, 0.22, 0.11, 0.07, 0.16, 0.11, 0.11, 0.13, 0.08, 0.1, 0.11, 0.1, 0.12, 0.08, 0.1, 0.11, 0.07, 0.08, 0.09, 0.16, 0.25, 0.0, 0.1, 0.13, 0.15, 0.11, 0.11, 0.13, 0.1
0.08, 0.08, 0.07, 0.07, 0.1, 0.09, 0.1, 0.07, 0.12, 0.08, 0.09, 0.08, 0.12, 0.09, 0.12, 0.12, 0.09, 0.12, 0.09, 0.15, 0.08, 0.14, 0.08, 0.1, 0.1, 0.0, 0.12, 0.14, 0.11, 0.2, 0.09, 0.13
0.11, 0.09, 0.11, 0.07, 0.14, 0.11, 0.1, 0.15, 0.11, 0.11, 0.1, 0.23, 0.13, 0.09, 0.12, 0.11, 0.1, 0.09, 0.07, 0.13, 0.09, 0.08, 0.1, 0.07, 0.13, 0.12, 0.0, 0.16, 0.07, 0.08, 0.09, 0.12
0.12, 0.08, 0.08, 0.13, 0.1, 0.11, 0.1, 0.07, 0.14, 0.11, 0.1, 0.1, 0.13, 0.12, 0.13, 0.11, 0.09, 0.08, 0.11, 0.09, 0.08, 0.12, 0.12, 0.12, 0.15, 0.14, 0.16, 0.0, 0.11, 0.18, 0.08, 0.08
0.11, 0.09, 0.07, 0.11, 0.1, 0.14, 0.11, 0.08, 0.16, 0.13, 0.15, 0.1, 0.1, 0.1, 0.18, 0.12, 0.14, 0.09, 0.07, 0.08, 0.12, 0.13, 0.09, 0.09, 0.11, 0.11, 0.07, 0.11, 0.0, 0.12, 0.12, 0.11
0.19, 0.07, 0.08, 0.1, 0.21, 0.11, 0.09, 0.07, 0.09, 0.09, 0.2, 0.07, 0.1, 0.07, 0.15, 0.13, 0.07, 0.1, 0.12, 0.07, 0.09, 0.11, 0.09, 0.07, 0.11, 0.2, 0.08, 0.18, 0.12, 0.0, 0.14, 0.12
0.08, 0.08, 0.08, 0.1, 0.12, 0.08, 0.07, 0.08, 0.12, 0.15, 0.1, 0.12, 0.09, 0.09, 0.11, 0.08, 0.07, 0.14, 0.1, 0.07, 0.08, 0.09, 0.11, 0.06, 0.13, 0.09, 0.09, 0.08, 0.12, 0.14, 0.0, 0.12
0.15, 0.08, 0.1, 0.08, 0.14, 0.08, 0.11, 0.11, 0.12, 0.11, 0.23, 0.15, 0.25, 0.15, 0.09, 0.15, 0.1, 0.08, 0.12, 0.1, 0.12, 0.11, 0.09, 0.09, 0.1, 0.13, 0.12, 0.08, 0.11, 0.12, 0.12, 0.0
67 changes: 67 additions & 0 deletions hpcc/32x1_myri/barplot.m
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%
% Load a set of communication data
load ammpi_32_64_100_comm.dat
Z = ammpi_32_64_100_comm;
h = bar3(Z);
for i = 1:length(h)
zdata = ones(6*length(h),4);
k = 1;
for j = 0:6:(6*length(h)-6)
zdata(j+1:j+6,:) = Z(k,i);
k = k+1;
end
set(h(i),'Cdata',zdata)
end
colormap jet
colorbar
view(-118.0,35.0)
axis tight
daspect([1,1,max(max(Z))/5])
hidden off
camzoom(1.1)
xlabel('Processor Rank')
ylabel('Processor Rank')
zlabel('MPI Latency (usecs)')
title('MPI Comm Latency')
print -dpng comm_angle
view (-90,90)
axis tight
daspect([1,1,10])
hidden off
camzoom(1.1)
print -dpng comm_top
%
% Load a set of variable data
%
load ammpi_32_64_100_var.dat
Z = ammpi_32_64_100_var;
h = bar3(Z);
for i = 1:length(h)
zdata = ones(6*length(h),4);
k = 1;
for j = 0:6:(6*length(h)-6)
zdata(j+1:j+6,:) = Z(k,i);
k = k+1;
end
set(h(i),'Cdata',zdata)
end
colormap jet
colorbar
view(-118.0,35.0)
axis tight
daspect([1,1,max(max(Z))/5])
hidden off
%lighting none
camzoom(1.1)
xlabel('Processor Rank')
ylabel('Processor Rank')
zlabel('MPI Latency Variability (StdDev)')
title('MPI Comm Latency Variability')
print -dpng vara
view (-90,90)
axis tight
daspect([1,1,10])
hidden off
camzoom(1.1)
%lighting flat
print -dpng vart
Binary file added hpcc/32x1_myri/comm_angle.png
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Binary file added hpcc/32x1_myri/comm_top.png
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19 changes: 19 additions & 0 deletions hpcc/32x1_myri/run32x1_mn.sh
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#!/bin/bash
#
# This is the pbs script template for the MMPI program
#
# We define the number of repitions for the data transfers, and the
# message length of each transfer. These are parameters that are passed
# into the main mmmpi program as well as to script that extracts the
# matlab arrays
#
#PBS -l nodes=32:ppn=1:myri
#PBS -l walltime=00:01:59
#PBS -q nbns
#PBS -o $PBS_JOBID.out
#PBS -e $PBS_JOBID.err
cd $PBS_O_WORKDIR
np=$(cat $PBS_NODEFILE | wc -l)
cat $PBS_NODEFILE
mpirun -np $np -machinefile $PBS_NODEFILE ./mmpi
exit 0
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