Added mmpi reports for alternative mpi task placements on mira and bl…

…ue waters

added new reports from mira and blue waters. added a powerpoint summary
of all available summaries. reorganized the directory structure to move
the matlab and python scripts out of the c program src directory.

.pydevproject

@@ -4,6 +4,7 @@
 <pydev_project>
 <pydev_pathproperty name="org.python.pydev.PROJECT_SOURCE_PATH">
 <path>/${PROJECT_DIR_NAME}</path>
+<path>/${PROJECT_DIR_NAME}/scripts</path>
 </pydev_pathproperty>
 <pydev_property name="org.python.pydev.PYTHON_PROJECT_VERSION">python 2.7</pydev_property>
 <pydev_property name="org.python.pydev.PYTHON_PROJECT_INTERPRETER">Default</pydev_property>

bw/128x1/barplot.m

@@ -0,0 +1,67 @@
+%
+% Load a set of communication data
+load ammpi_128_64_100_comm.dat
+Z = ammpi_128_64_100_comm;
+h = bar3(Z);
+for i = 1:length(h)
+    zdata = ones(6*length(h),4);
+    k = 1;
+    for j = 0:6:(6*length(h)-6)
+        zdata(j+1:j+6,:) = Z(k,i);
+        k = k+1;
+    end
+    set(h(i),'Cdata',zdata)
+end
+colormap jet
+colorbar
+view(-118.0,35.0)
+axis tight
+daspect([1,1,max(max(Z))/5])
+hidden off
+camzoom(1.1)
+xlabel('Processor Rank')
+ylabel('Processor Rank')
+zlabel('MPI Latency (usecs)')
+title('MPI Comm Latency')
+print -dpng comm_angle
+view (-90,90)
+axis tight
+daspect([1,1,10])
+hidden off
+camzoom(1.1)
+print -dpng comm_top
+%
+% Load a set of variable data
+%
+load ammpi_128_64_100_var.dat
+Z = ammpi_128_64_100_var;
+h = bar3(Z);
+for i = 1:length(h)
+    zdata = ones(6*length(h),4);
+    k = 1;
+    for j = 0:6:(6*length(h)-6)
+        zdata(j+1:j+6,:) = Z(k,i);
+        k = k+1;
+    end
+    set(h(i),'Cdata',zdata)
+end
+colormap jet
+colorbar
+view(-118.0,35.0)
+axis tight
+daspect([1,1,max(max(Z))/5])
+hidden off
+%lighting none
+camzoom(1.1)
+xlabel('Processor Rank')
+ylabel('Processor Rank')
+zlabel('MPI Latency Variability (StdDev)')
+title('MPI Comm Latency Variability')
+print -dpng vara
+view (-90,90)
+axis tight
+daspect([1,1,10])
+hidden off
+camzoom(1.1)
+%lighting flat
+print -dpng vart

bw/128x1/run128x1.sh

@@ -0,0 +1,13 @@
+#!/bin/bash
+#PBS -l walltime=00:10:00
+#PBS -l nodes=128:ppn=1:xe
+#PBS -e $PBS_JOBID_mmpi.err
+#PBS -o $PBS_JOBID_mmpi.out
+#PBS -q debug
+#PBS -A jmz
+cd $PBS_O_WORKDIR
+echo $PBS_O_WORKDIR
+## aprun -n 4 (Width as in number of PE)
+## aprun -N 1 (Number of PEs per node)
+date
+aprun -n 128 -N 1 ./mmpi