Repositories list

• rna_flow

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •0•2•0•0•Updated Nov 21, 2024Nov 21, 2024

• allele_specific_RNA_maturation

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• genewalk

  Public
  GeneWalk identifies relevant gene functions for a biological context using network representation learning

  functional-genomicsmachine-learning-algorithm

  Python

  •

  BSD 2-Clause "Simplified" License

  •15•129•0•0•Updated Aug 1, 2024Aug 1, 2024

• human-mitoribosome-profiling

  Public
  R

  •1•3•0•0•Updated Jul 16, 2024Jul 16, 2024

• mitoRNA_kinetics

  Public
  Mitochondrial RNA kinetics

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• mtFiberseq

  Public
  Shell

  •

  MIT License

  •0•0•0•0•Updated Nov 14, 2023Nov 14, 2023

• splicing_order

  Public
  Jupyter Notebook

  •1•3•0•1•Updated May 16, 2023May 16, 2023

• SPT5_erythropoiesis

  Public
  R

  •0•0•0•0•Updated Feb 24, 2023Feb 24, 2023

• Yeast_NETseq_Screen

  Public
  Dynamics of transcription elongation are finely-tuned by dozens of regulatory factors

  Perl

  •1•0•0•0•Updated Mar 20, 2022Mar 20, 2022

• nano-COP

  Public
  Nanopore analysis of CO-transcriptional processing exposes the nascent transcriptome via direct long-read RNA-seq

  Jupyter Notebook

  •3•8•0•0•Updated Jan 29, 2021Jan 29, 2021

• MiMB2019NETseq

  Public
  NETseq alignment pipeline as described in Martell et al, Methods in Molecular Biology (in press)

  Shell

  •

  MIT License

  •1•2•0•0•Updated Jan 3, 2021Jan 3, 2021

• FIDDLE

  Public
  functional genomic data integration

  Jupyter Notebook

  •

  MIT License

  •2•10•0•0•Updated Sep 22, 2019Sep 22, 2019

• Cell2015human_NETseq

  Public
  Python

  •2•0•0•0•Updated Aug 29, 2018Aug 29, 2018

• Nature2011yeast_NETseq

  Public
  Python

  •1•2•0•0•Updated Aug 15, 2012Aug 15, 2012