human_NETseq

Scripts used for human NETseq alignment in Mayer and di Iulio et al (Cell 2015) and Mayer et al (Nature Prot 2016).

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
GB_coord.txt.gz		GB_coord.txt.gz
PP_coord.txt.gz		PP_coord.txt.gz
Parameters.in		Parameters.in
README.md		README.md
SI_coordinates_1based.txt.gz		SI_coordinates_1based.txt.gz
customCoverage.py		customCoverage.py
extractMolecularBarcode.py		extractMolecularBarcode.py
extractReadsWithMismatchesIn6FirstNct.py		extractReadsWithMismatchesIn6FirstNct.py
gencode.v16_intronExonSpliceIntermAnnotation_ALL_forHTSeq_noParenthesis_3bpAt3end_1.gtf.gz		gencode.v16_intronExonSpliceIntermAnnotation_ALL_forHTSeq_noParenthesis_3bpAt3end_1.gtf.gz
gencode.v16_intronExonSpliceIntermAnnotation_ALL_forHTSeq_noParenthesis_3bpAt3end_2.gtf.gz		gencode.v16_intronExonSpliceIntermAnnotation_ALL_forHTSeq_noParenthesis_3bpAt3end_2.gtf.gz
htseq-count_custom.py		htseq-count_custom.py
pipeline_NETseq.sh		pipeline_NETseq.sh
removePCRduplicateStringent.py		removePCRduplicateStringent.py
travelRatio.r		travelRatio.r

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