Merge pull request #6326 from openjournals/joss.07399

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openjournals · Jan 9, 2025 · b8dcceb · b8dcceb
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diff --git a/joss.07399/10.21105.joss.07399.crossref.xml b/joss.07399/10.21105.joss.07399.crossref.xml
@@ -6,8 +6,8 @@
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+    <doi_batch_id>20250109225238-a3c4e543d226ce24b5920156eeff6478a2deaf90</doi_batch_id>
+    <timestamp>20250109225238</timestamp>
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@@ -231,11 +231,14 @@
             <unstructured_citation>Kikinis, R., Pieper, S. D., &amp; Vosburgh, K. (2014). 3D Slicer: A platform for subject-specific image analysis, visualization, and clinical support. In F. A. Jolesz (Ed.), Intraoperative Imaging Image-Guided Therapy (Vol. 3(19), pp. 277–289). https://doi.org/10.1007/978-1-4614-7657-3_19</unstructured_citation>
           </citation>
           <citation key="pytomography">
-            <article_title>PyTomography: A Python library for quantitative medical image reconstruction</article_title>
+            <article_title>PyTomography: A python library for medical image reconstruction</article_title>
             <author>Polson</author>
-            <doi>10.48550/arXiv.2309.01977</doi>
-            <cYear>2024</cYear>
-            <unstructured_citation>Polson, L., Fedrigo, R., Li, C., Sabouri, M., Dzikunu, O., Ahamed, S., Karakatsanis, N., Rahmim, A., &amp; Uribe, C. (2024). PyTomography: A Python library for quantitative medical image reconstruction. https://doi.org/10.48550/arXiv.2309.01977</unstructured_citation>
+            <journal_title>SoftwareX</journal_title>
+            <volume>29</volume>
+            <doi>10.1016/j.softx.2024.102020</doi>
+            <issn>2352-7110</issn>
+            <cYear>2025</cYear>
+            <unstructured_citation>Polson, L. A., Fedrigo, R., Li, C., Sabouri, M., Dzikunu, O., Ahamed, S., Karakatsanis, N., Kurkowska, S., Sheikhzadeh, P., Esquinas, P., Rahmim, A., &amp; Uribe, C. (2025). PyTomography: A python library for medical image reconstruction. SoftwareX, 29, 102020. https://doi.org/10.1016/j.softx.2024.102020</unstructured_citation>
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           <citation key="spect_ai">
             <article_title>Artificial intelligence in single photon emission computed tomography (SPECT) imaging: A narrative review</article_title>

diff --git a/joss.07399/10.21105.joss.07399.pdf b/joss.07399/10.21105.joss.07399.pdf
diff --git a/joss.07399/paper.jats/10.21105.joss.07399.jats b/joss.07399/paper.jats/10.21105.joss.07399.jats
@@ -154,8 +154,8 @@ a Creative Commons Attribution 4.0 International License (CC BY
   popular reconstruction algorithms and requires raw projection data
   from clinical or Monte Carlo simulated scanners. Built with the
   PyTomography Python library
-  (<xref alt="Polson et al., 2024" rid="ref-pytomography" ref-type="bibr">Polson
-  et al., 2024</xref>), it features GPU-accelerated functionality for
+  (<xref alt="Polson et al., 2025" rid="ref-pytomography" ref-type="bibr">Polson
+  et al., 2025</xref>), it features GPU-accelerated functionality for
   fast reconstruction. The extension includes a graphical user interface
   for the selection of reconstruction parameters, and reconstructed
   images can be post-processed using all available
@@ -173,8 +173,8 @@ a Creative Commons Attribution 4.0 International License (CC BY
   software packages
   (<xref alt="Merlin et al., 2018" rid="ref-castor" ref-type="bibr">Merlin
   et al., 2018</xref>;
-  <xref alt="Polson et al., 2024" rid="ref-pytomography" ref-type="bibr">Polson
-  et al., 2024</xref>;
+  <xref alt="Polson et al., 2025" rid="ref-pytomography" ref-type="bibr">Polson
+  et al., 2025</xref>;
   <xref alt="Thielemans et al., 2006" rid="ref-STIR" ref-type="bibr">Thielemans
   et al., 2006</xref>), there is currently no open source graphic user
   interface (GUI) that provides access to the latest reconstruction
@@ -497,22 +497,30 @@ a Creative Commons Attribution 4.0 International License (CC BY
     </element-citation>
   </ref>
   <ref id="ref-pytomography">
-    <element-citation>
+    <element-citation publication-type="article-journal">
       <person-group person-group-type="author">
-        <name><surname>Polson</surname><given-names>Lucas</given-names></name>
+        <name><surname>Polson</surname><given-names>Lucas A.</given-names></name>
         <name><surname>Fedrigo</surname><given-names>Roberto</given-names></name>
         <name><surname>Li</surname><given-names>Chenguang</given-names></name>
         <name><surname>Sabouri</surname><given-names>Maziar</given-names></name>
         <name><surname>Dzikunu</surname><given-names>Obed</given-names></name>
         <name><surname>Ahamed</surname><given-names>Shadab</given-names></name>
-        <name><surname>Karakatsanis</surname><given-names>Nikolaos</given-names></name>
+        <name><surname>Karakatsanis</surname><given-names>Nicolas</given-names></name>
+        <name><surname>Kurkowska</surname><given-names>Sara</given-names></name>
+        <name><surname>Sheikhzadeh</surname><given-names>Peyman</given-names></name>
+        <name><surname>Esquinas</surname><given-names>Pedro</given-names></name>
         <name><surname>Rahmim</surname><given-names>Arman</given-names></name>
         <name><surname>Uribe</surname><given-names>Carlos</given-names></name>
       </person-group>
-      <article-title>PyTomography: A Python library for quantitative medical image reconstruction</article-title>
-      <year iso-8601-date="2024">2024</year>
-      <uri>https://arxiv.org/abs/2309.01977</uri>
-      <pub-id pub-id-type="doi">10.48550/arXiv.2309.01977</pub-id>
+      <article-title>PyTomography: A python library for medical image reconstruction</article-title>
+      <source>SoftwareX</source>
+      <year iso-8601-date="2025">2025</year>
+      <volume>29</volume>
+      <issn>2352-7110</issn>
+      <uri>https://www.sciencedirect.com/science/article/pii/S235271102400390X</uri>
+      <pub-id pub-id-type="doi">10.1016/j.softx.2024.102020</pub-id>
+      <fpage>102020</fpage>
+      <lpage></lpage>
     </element-citation>
   </ref>
   <ref id="ref-spect_ai">