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Remove injection of property chains over 'develops from'. #3467

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Remove injection of property chains over 'develops from'. #3467

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1 change: 0 additions & 1 deletion src/ontology/catalog-v001.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -43,7 +43,6 @@
<uri name="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-wbbt.owl" uri="bridge/uberon-bridge-to-wbbt.owl"/>
<uri name="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-wbls.owl" uri="bridge/uberon-bridge-to-wbls.owl"/>
<uri name="http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-xao.owl" uri="bridge/uberon-bridge-to-xao.owl"/>
<uri name="http://purl.obolibrary.org/obo/uberon/components/develops-from-chains.owl" uri="components/develops-from-chains.owl"/>
<uri name="http://purl.obolibrary.org/obo/uberon/components/disjoint_union_over.owl" uri="components/disjoint_union_over.owl"/>
<uri name="http://purl.obolibrary.org/obo/uberon/components/hra_depiction_3d_images.owl" uri="components/hra_depiction_3d_images.owl"/>
<uri name="http://purl.obolibrary.org/obo/uberon/components/hra_subset.owl" uri="components/hra_subset.owl"/>
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13 changes: 0 additions & 13 deletions src/ontology/components/develops-from-chains.owl
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1 change: 0 additions & 1 deletion src/ontology/uberon-edit.obo
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Expand Up @@ -55,7 +55,6 @@ treat-xrefs-as-equivalent: VSAO
treat-xrefs-as-is_a: BFO
treat-xrefs-as-is_a: VHOG
remark: Aurelie Comte, Bill Bug, Catherine Leroy, Duncan Davidson and Trish Whetzel are also contributors. However their ORCIDs were not found.
import: http://purl.obolibrary.org/obo/uberon/components/develops-from-chains.owl
import: http://purl.obolibrary.org/obo/uberon/components/disjoint_union_over.owl
import: http://purl.obolibrary.org/obo/uberon/components/hra_depiction_3d_images.owl
import: http://purl.obolibrary.org/obo/uberon/components/hra_subset.owl
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7 changes: 1 addition & 6 deletions src/ontology/uberon.Makefile
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Expand Up @@ -117,9 +117,6 @@ $(OWLSRC): $(SRC) $(REPORTDIR)/$(SRC)-gocheck $(REPORTDIR)/$(SRC)-iconv
-o $@

# Step 2: Reasoning.
# For the temporary injection of property chains, see
# <https://github.com/obophenotype/uberon/issues/2381>
DEVELOPS_FROM_CHAIN=$(COMPONENTSDIR)/develops-from-chains.owl
# The 'materialize' step is too resource-intensive for the GitHub
# Action runners, so we leave it out when running online QC checks, see
# <https://github.com/obophenotype/uberon/pull/3087#issuecomment-1755553647>
Expand All @@ -128,13 +125,11 @@ MATERIALIZE=
else
MATERIALIZE = materialize -T $(CONFIGDIR)/basic_properties.txt -r elk
endif
$(POSTPROCESS_SRC): $(OWLSRC) $(BRIDGEDIR)/uberon-bridge-to-bfo.owl $(DEVELOPS_FROM_CHAIN)
$(POSTPROCESS_SRC): $(OWLSRC) $(BRIDGEDIR)/uberon-bridge-to-bfo.owl
$(ROBOT) merge -i $(OWLSRC) -i $(BRIDGEDIR)/uberon-bridge-to-bfo.owl \
-i $(DEVELOPS_FROM_CHAIN) \
relax $(MATERIALIZE) \
reason -r elk --exclude-duplicate-axioms true \
--equivalent-classes-allowed asserted-only \
unmerge -i $(DEVELOPS_FROM_CHAIN) \
annotate -O $(URIBASE)/uberon.owl -V $(RELEASE)/uberon.owl -o $@

# Step 3: Postprocessing. We merge some files that are derived from the
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