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[WIP] Backport 8.2: Python 3.13 support #9754

[WIP] Backport 8.2: Python 3.13 support

[WIP] Backport 8.2: Python 3.13 support #9754

Triggered via pull request January 24, 2025 23:40
Status Success
Total duration 28m 32s
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neuron-ci.yml

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Matrix: ci
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63 warnings
ubuntu-20.04 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - setuptools (CC=gcc-9 CXX=g++-9)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - setuptools (CC=gcc-9 CXX=g++-9)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DCORENRN_SANITIZERS=undefined)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DCORENRN_SANITIZERS=undefined)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DCORENRN_SANITIZERS=undefined): src/parallel/bbslocal.cpp#L60
variable 'i' is used uninitialized whenever '||' condition is true [-Wsometimes-uninitialized]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DCORENRN_SANITIZERS=undefined): src/parallel/bbslocal.cpp#L67
variable 'x' is used uninitialized whenever '||' condition is true [-Wsometimes-uninitialized]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DCORENRN_SANITIZERS=undefined): src/parallel/bbslocal.cpp#L82
variable 'len' is used uninitialized whenever '||' condition is true [-Wsometimes-uninitialized]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DCORENRN_SANITIZERS=undefined): src/parallel/bbslocal.cpp#L95
variable 'len' is used uninitialized whenever '||' condition is true [-Wsometimes-uninitialized]
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DCORENRN_SANITIZERS=undefined): src/nrnoc/solve.cpp#L249
variable 'd_origin' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
ubuntu-20.04 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_PYTHON=OFF -DNRN_ENABLE_RX3D=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-10 CXX=g++-10)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - cmake (CC=gcc-8 CXX=g++-8)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - cmake (CC=gcc-8 CXX=g++-8)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - cmake (CC=gcc-9 CXX=g++-9)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-20.04 - cmake (CC=gcc-9 CXX=g++-9)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_MPI=OFF -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DCORENRN_SANITIZERS=address)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
ubuntu-22.04 - cmake (-DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DCORENRN_SANITIZERS=address)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - setuptools (CC=gcc-9 CXX=g++-9)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (-DNRN_ENABLE_CORENEURON=ONCC=gcc-7 CXX=g++-7)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (CC=gcc-8 CXX=g++-8)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (CC=gcc-8 CXX=g++-8)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (CC=gcc-8 CXX=g++-8)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (CC=gcc-8 CXX=g++-8)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
macOS-13 - cmake (CC=gcc-8 CXX=g++-8)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (CC=gcc-8 CXX=g++-8)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (CC=gcc-9 CXX=g++-9)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (CC=gcc-9 CXX=g++-9)
Input 'save-always' has been deprecated with message: save-always does not work as intended and will be removed in a future release. A separate `actions/cache/restore` step should be used instead. See https://github.com/actions/cache/tree/main/save#always-save-cache for more details.
macOS-13 - cmake (CC=gcc-9 CXX=g++-9)
Treating doxygen as a formula. For the cask, use homebrew/cask/doxygen or specify the `--cask` flag. To silence this message, use the `--formula` flag.
macOS-13 - cmake (CC=gcc-9 CXX=g++-9)
xz 5.6.3 is already installed and up-to-date. To reinstall 5.6.3, run: brew reinstall xz
macOS-13 - cmake (CC=gcc-9 CXX=g++-9)
autoconf 2.72 is already installed and up-to-date. To reinstall 2.72, run: brew reinstall autoconf
macOS-13 - cmake (CC=gcc-9 CXX=g++-9)
libtool 2.5.4 is already installed and up-to-date. To reinstall 2.5.4, run: brew reinstall libtool
Final CI
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636