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Add --zotu-identity parameter for zOTU table generation step #112

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merged 1 commit into from
Oct 18, 2024

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@mhoban mhoban commented Oct 18, 2024

This resolves #85, for cases where users really need to customize this.

@mhoban mhoban linked an issue Oct 18, 2024 that may be closed by this pull request
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mhoban commented Oct 18, 2024

This update adds a --zotu-identity parameter that controls the --id (vsearch) or -id (usearch) parameter in the zOTU table generation step.

It also adds a zotu_map.tsv file to the dereplication output. This file shows which raw reads (.number) are mapped to which zOTU, and theoretically allows some forensic investigation.

@mhoban mhoban merged commit d9b695c into main Oct 18, 2024
@mhoban mhoban deleted the zotu_identity branch October 18, 2024 20:41
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zotu fasta and insect contain more zotus than zotu table
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