Merge pull request #43 from sidohaakma/feat/add-new-eating-disorder-vars

feat: added eating disorder variables

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: lifecycleProject
 Title: Protocols and Sample analysis
-Version: 2.1.0
+Version: 2.2.0
 Authors@R: person("Sido", "Haakma", email = "[email protected]",
                   role = c("aut", "cre"))
 Description: We supply standardised ways to upload and import versioned data dictionaries. 

changelogs/CORE_DICTIONARY_CHANGELOG.md

@@ -2,28 +2,83 @@
 We define here in what versions of the data dictionaries contains which tables.
 
 ## 2.0
-**lifecycleProject R-package version >= 1.1.0**
+**lifecycleProject R-package version >= 2.1.0**
 
-Additional variables from WP3 and changes in the lifecycle variables.
+Additional variables from WP3 and changes in the lifecycle variables. Minor changes in core variables.
 
 ### Content
 
 **General changes**
-* Create a seperate table for the trimester variables.
+* Create a seperate table for the trimester variables
+* Moved smk_t* and alc_t* to the trimester variables
+* Fixed requite_age in non-repeated variables
+* Changing the child_id's columntype to character to overcome the maximum integer problem
 
-**Workpackage 3**
-- EUSILC variables (task 3.1.1)
-- Migration variables (task 3.1.2)
-- (task 3.1.3)
-- (task 3.1.4)
 
-**Workpackage 1**
-* Changing the child_id's columntype to character to overcome the maximum integer problem
+**Additional variables**
+Extensions of the core variables by individuals within LifeCycle or workpackages within LifeCycle.
+
+**Cats and dog variables**
+
+Contributed by: Angela Pinot de Moira ([email protected])
+
+*Non-repeated variables*
+
+| Variable        | Type    | Description                           |
+| --------------- | ------- | ------------------------------------- |
+| cats_preg	      | integer	| Cat ownership during pregnancy        |
+| cats_quant_preg	| integer	|	Number of cats owned during pregnancy |
+| dogs_preg	      | integer	|	Dog ownership during pregnancy        |
+| dogs_quant_preg	| integer |	Number of dogs owned during pregnancy |
+
+**Eating disorder variables**
+
+Contributed by: Maja Popovic ([email protected])
+
+*Non-repeated variables*
+
+| Variable    | Type    | Description                                                    |
+| ----------- | ------- | -------------------------------------------------------------- |
+| prepreg_dep	| integer	| Maternal history of depressive disorders                       |
+| prepreg_anx |	integer	| Maternal history of anxiety disorders                          |
+| prepreg_ed  |	integer	| Maternal history of any eating disorder                        |
+| preg_ed	    | integer	| Maternal any eating disorder active during the index pregnancy |
+| prepreg_an  |	integer	| Maternal history of anorexia nervosa                           |
+| preg_an	    | integer	| Maternal anorexia nervosa active during the index pregnancy    |
+| prepreg_bn  |	integer	| Maternal history of bulimia nervosa                            |
+| preg_bn     |	integer |	Maternal bulimia nervosa active during the index pregnancy     |
+
+*Yearly-repeated measures*
+
+| Variable    | Type    | Description                                                    |
+| ----------- | ------- | -------------------------------------------------------------- |
+| ed_m_	      | integer	| Maternal any eating disorder active after the index pregnancy  |
+| an_m_       |	integer	| Maternal anorexia nervosa active after the index pregnancy     |
+| bn_m_	      | integer |	Maternal bulimia nervosa active after the index pregnancy      |
+
+**Socio-economic stressors (task 3.1.1)**
+
+Contributed by: Constanza Pizzi ([email protected])
+
+*Non-repeated variables*
+
+| Variable              | Type    | Description                                                                              |
+| --------------------- | ------- | ---------------------------------------------------------------------------------------- |
+eusilc_income         	| decimal	| Predicted log-equivalised total disposable household income at baseline                  |
+eusilc_income_quintiles |	integer	| Quintiles of the predicted log-equivalised total disposable household income at baseline |
+
+**Migration stressors (task 3.1.2)**
+
+**Urban environment stressors (task 3.1.3)**
+
+**Lifestyle related stressors (task 3.1.4)**
+
 
 ### Tables
-- 1_1_core_cohort-id_x_x_non_repeated_measures
-- 1_1_core_cohort-id_x_x_quaterly_measures
-- 1_1_core_cohort-id_x_x_yearly_measures
+- 1_1_core_x_x_non_repeated_measures
+- 1_1_core_x_x_trimester_measures
+- 1_1_core_x_x_yearly_measures
+- 1_1_core_x_x_monthly_measures
 
 ## 1.0
 **lifecycleProject R-package version >= 1.0.4**

changelogs/OUTCOME_DICTIONARY_CHANGELOG.md

@@ -8,16 +8,16 @@ New variables for work packages 4, 5 and 6.
 
 ### Content
 
-**Workpackage 4**
+**Early-life stressors and cardio-metabolic health life course trajectories (WP4)**
 
 
-**Workpackage 5**
+**Early-life stressors and respiratory health life course trajectories (WP5)**
 
 
-**Workpackage 6**
+**Early-life stressors and mental health life course trajectories (WP6)**
 
 ### Tables
-- 1_0_outcome_cohort-id_x_x_non_repeated
-- 1_0_outcome_cohort-id_x_x_weekly_repeated
-- 1_0_outcome_cohort-id_x_x_monthly_repeated
-- 1_0_outcome_cohort-id_x_x_yearly_repeated
+- 1_0_outcome_x_x_non_repeated
+- 1_0_outcome_x_x_weekly_repeated
+- 1_0_outcome_x_x_monthly_repeated
+- 1_0_outcome_x_x_yearly_repeated