googlegenomics · mbookman · Jan 26, 2017 · Jan 10, 2017 · Jan 26, 2017 · Jan 26, 2017
diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -129,7 +129,7 @@
 .. _Global Alliance for Genomics and Health Beacon: http://ga4gh.org/#/beacon
 
 .. ### VCF documentation links
-.. _VCF specification: http://samtools.github.io/hts-specs/VCFv4.2.pdf
+.. _VCF specification: https://samtools.github.io/hts-specs/VCFv4.3.pdf
 .. _gVCF: https://sites.google.com/site/gvcftools/home/about-gvcf
 .. _genome VCF: https://sites.google.com/site/gvcftools/home/about-gvcf
 .. _gVCF conventions: https://sites.google.com/site/gvcftools/home/about-gvcf/gvcf-conventions

diff --git a/docs/source/use_cases/analyze_variants/analyze_variants_with_bigquery.rst b/docs/source/use_cases/analyze_variants/analyze_variants_with_bigquery.rst
diff --git a/...urce/use_cases/analyze_variants/analyze_variants_with_bigquery/FILTER_count.png b/...urce/use_cases/analyze_variants/analyze_variants_with_bigquery/FILTER_count.png
diff --git a/...ariants/analyze_variants_with_bigquery/My_Project_with_genomics_public_data.png b/...ariants/analyze_variants_with_bigquery/My_Project_with_genomics_public_data.png
diff --git a/...with_bigquery/repeated_fields_example.png → ...ts_with_bigquery/array_fields_example.png b/...with_bigquery/repeated_fields_example.png → ...ts_with_bigquery/array_fields_example.png
diff --git a/...ses/analyze_variants/analyze_variants_with_bigquery/call_count_for_call_set.png b/...ses/analyze_variants/analyze_variants_with_bigquery/call_count_for_call_set.png
diff --git a/...e_variants/analyze_variants_with_bigquery/calls_with_multiple_FILTER_values.png b/...e_variants/analyze_variants_with_bigquery/calls_with_multiple_FILTER_values.png
diff --git a/...variants/analyze_variants_with_bigquery/count_high_quality_calls_per_sample.png b/...variants/analyze_variants_with_bigquery/count_high_quality_calls_per_sample.png
diff --git a/...ariants/analyze_variants_with_bigquery/count_high_quality_non_variant_calls.png b/...ariants/analyze_variants_with_bigquery/count_high_quality_non_variant_calls.png
diff --git a/...ze_variants/analyze_variants_with_bigquery/count_high_quality_variant_calls.png b/...ze_variants/analyze_variants_with_bigquery/count_high_quality_variant_calls.png
diff --git a/...yze_variants/analyze_variants_with_bigquery/count_true_variants_per_callset.png b/...yze_variants/analyze_variants_with_bigquery/count_true_variants_per_callset.png
diff --git a/...e_variants/analyze_variants_with_bigquery/count_true_variants_per_callset_2.png b/...e_variants/analyze_variants_with_bigquery/count_true_variants_per_callset_2.png
diff --git a/...yze_variants/analyze_variants_with_bigquery/true_variants_by_chromome_final.png b/...yze_variants/analyze_variants_with_bigquery/true_variants_by_chromome_final.png
diff --git a/...ariants/analyze_variants_with_bigquery/true_variants_by_chromome_pad_with_0.png b/...ariants/analyze_variants_with_bigquery/true_variants_by_chromome_pad_with_0.png
diff --git a/...alyze_variants/analyze_variants_with_bigquery/true_variants_by_chromosome_1.png b/...alyze_variants/analyze_variants_with_bigquery/true_variants_by_chromosome_1.png
diff --git a/...iants/analyze_variants_with_bigquery/true_variants_by_chromosome_as_integer.png b/...iants/analyze_variants_with_bigquery/true_variants_by_chromosome_as_integer.png
diff --git a/...iants/analyze_variants_with_bigquery/true_variants_by_chromosome_remove_chr.png b/...iants/analyze_variants_with_bigquery/true_variants_by_chromosome_remove_chr.png
diff --git a/...nts/analyze_variants_with_bigquery/true_variants_by_chrosome_only_autosomes.png b/...nts/analyze_variants_with_bigquery/true_variants_by_chrosome_only_autosomes.png
diff --git a/...s/analyze_variants_with_bigquery/true_variants_by_chrosome_ordered_by_count.png b/...s/analyze_variants_with_bigquery/true_variants_by_chrosome_ordered_by_count.png
diff --git a/...ases/analyze_variants/analyze_variants_with_bigquery/variants_table_details.png b/...ases/analyze_variants/analyze_variants_with_bigquery/variants_table_details.png
diff --git a/...e_cases/analyze_variants/analyze_variants_with_bigquery/variants_table_info.png b/...e_cases/analyze_variants/analyze_variants_with_bigquery/variants_table_info.png
diff --git a/...ases/analyze_variants/analyze_variants_with_bigquery/variants_table_preview.png b/...ases/analyze_variants/analyze_variants_with_bigquery/variants_table_preview.png
diff --git a/...cases/analyze_variants/analyze_variants_with_bigquery/variants_table_schema.png b/...cases/analyze_variants/analyze_variants_with_bigquery/variants_table_schema.png