Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Issue 29159 #29186

Merged
merged 7 commits into from
Nov 12, 2024
Merged

Issue 29159 #29186

merged 7 commits into from
Nov 12, 2024

Conversation

raymond91125
Copy link
Contributor

No description provided.

Copy link

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-12/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

  • Ontology IRI: http://purl.obolibrary.org/obo/go.owl
  • Version IRI: http://purl.obolibrary.org/obo/go/releases/2024-11-12/go.owl
  • Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

antifreeze activity http://purl.obolibrary.org/obo/GO_0016172

Removed

  • antifreeze activity definition "Inhibits the growth and recrystallization of ice crystals, thereby lowering the freezing point of water and preventing cellular damage at subzero temperatures. This activity is observed in various cold-adapted organisms, including certain fish, insects, and plants, and contributes to survival in extreme cold environments by stabilizing supercooled liquid states."

Added

  • antifreeze activity definition "Inhibits the growth and recrystallization of ice crystals, thereby lowering the freezing point of water and preventing cellular damage at subzero temperatures. This activity is observed in various cold-adapted organisms, including certain fish, insects, and plants, and contributes to survival in extreme cold environments by stabilizing supercooled liquid states."

blastocyst development http://purl.obolibrary.org/obo/GO_0001824

Removed

Added

blastocyst formation http://purl.obolibrary.org/obo/GO_0001825

Removed

blastocyst growth http://purl.obolibrary.org/obo/GO_0001832

Removed

blastocyst hatching http://purl.obolibrary.org/obo/GO_0001835

Removed

catabolism by virus of host DNA http://purl.obolibrary.org/obo/GO_0039637

Removed

Added

cellular pH http://purl.obolibrary.org/obo/OBA_0000058

Removed

cortical endoplasmic reticulum membrane http://purl.obolibrary.org/obo/GO_0160219

Added

degradation of host chromosome by virus http://purl.obolibrary.org/obo/GO_0099015

Removed

Added

evasion by virus of host natural killer cell activity http://purl.obolibrary.org/obo/GO_0039671

Removed

induction by virus of host autophagy http://purl.obolibrary.org/obo/GO_0039520

Removed

Added

induction by virus of host reticulophagy http://purl.obolibrary.org/obo/GO_0140883

Removed

Added

modulation by symbiont of host salicylic acid-mediated defense response http://purl.obolibrary.org/obo/GO_0052089

Removed

Added

modulation by virus of host autophagy http://purl.obolibrary.org/obo/GO_0039519

Removed

Added

modulation by virus of host cell division http://purl.obolibrary.org/obo/GO_0044863

Removed

Added

modulation by virus of host cytokine production http://purl.obolibrary.org/obo/GO_0044831

Removed

Added

modulation by virus of host cytoplasmic transport http://purl.obolibrary.org/obo/GO_1903652

Removed

Added

modulation by virus of host protein transport http://purl.obolibrary.org/obo/GO_0044833

Removed

Added

modulation of nutrient release by host http://purl.obolibrary.org/obo/GO_0052091

Removed

Added

morula http://purl.obolibrary.org/obo/UBERON_0000085

Removed

morula development http://purl.obolibrary.org/obo/GO_0014000

Removed

morula formation http://purl.obolibrary.org/obo/GO_0140001

Removed

negative regulation by virus of host cell division http://purl.obolibrary.org/obo/GO_0044865

Removed

Added

negative regulation of transformation of host cell by virus http://purl.obolibrary.org/obo/GO_1904188

Removed

Added

negatively regulates in another organism http://purl.obolibrary.org/obo/RO_0012014

Removed

neutrophic extracellular trap formation http://purl.obolibrary.org/obo/GO_0140645

Removed

Added

positive regulation by virus of host cell division http://purl.obolibrary.org/obo/GO_0044864

Removed

Added

positive regulation of transformation of host cell by virus http://purl.obolibrary.org/obo/GO_1904189

Removed

Added

positively regulates in another organism http://purl.obolibrary.org/obo/RO_0012013

Removed

regulation of intracellular pH http://purl.obolibrary.org/obo/GO_0051453

Removed

Added

regulation of lysosomal lumen pH http://purl.obolibrary.org/obo/GO_0035751

Added

regulation of transformation of host cell by virus http://purl.obolibrary.org/obo/GO_1904187

Added

reorganization of cellular membranes to establish viral sites of replication http://purl.obolibrary.org/obo/GO_0140754

Removed

Added

reorganization of host cellular membranes to establish sites of replication http://purl.obolibrary.org/obo/GO_0140755

Removed

Added

suppression by virus of host autophagy http://purl.obolibrary.org/obo/GO_0039521

Removed

Added

suppression by virus of host cell wall biogenesis http://purl.obolibrary.org/obo/GO_0039636

Removed

Added

suppression by virus of host cytokine production http://purl.obolibrary.org/obo/GO_0046775

Added

suppression by virus of host natural killer cell activation http://purl.obolibrary.org/obo/GO_0039672

Removed

Added

suppression by virus of host peptidoglycan biosynthetic process http://purl.obolibrary.org/obo/GO_0039635

Removed

Added

suppression by virus of host type I interferon production http://purl.obolibrary.org/obo/GO_0039501

Removed

Added

symbiont-mediated activation of host apoptosis http://purl.obolibrary.org/obo/GO_0052151

Removed

Added

symbiont-mediated activation of host autophagy http://purl.obolibrary.org/obo/GO_0141088

Removed

Added

symbiont-mediated activation of host plasminogen http://purl.obolibrary.org/obo/GO_0044542

Removed

Added

symbiont-mediated activation of host programmed cell death http://purl.obolibrary.org/obo/GO_0052042

Removed

Added

symbiont-mediated activation of host transcription http://purl.obolibrary.org/obo/GO_1990216

Removed

Added

symbiont-mediated arrest of host cell cycle during G2/M transition http://purl.obolibrary.org/obo/GO_0039592

Removed

Added

symbiont-mediated disruption of host cell-cell adhesion http://purl.obolibrary.org/obo/GO_0141023

Removed

Added

symbiont-mediated induction of syncytium formation http://purl.obolibrary.org/obo/GO_0060141

Removed

Added

symbiont-mediated perturbation of host autophagy http://purl.obolibrary.org/obo/GO_0075071

Removed

Added

symbiont-mediated perturbation of host erythrocyte aggregation http://purl.obolibrary.org/obo/GO_0020013

Removed

Added

symbiont-mediated perturbation of host salicylic acid-mediated signal transduction pathway http://purl.obolibrary.org/obo/GO_0052081

Added

symbiont-mediated perturbation of host synaptic transmission http://purl.obolibrary.org/obo/GO_0044758

Removed

Added

symbiont-mediated perturbation of host systemic acquired resistance http://purl.obolibrary.org/obo/GO_0052160

Removed

Added

symbiont-mediated suppression of defense-related host salicylic acid-mediated signal transduction pathway http://purl.obolibrary.org/obo/GO_0052003

Removed

Added

symbiont-mediated suppression of host DNA replication http://purl.obolibrary.org/obo/GO_0098673

Removed

Added

symbiont-mediated suppression of host apoptosis http://purl.obolibrary.org/obo/GO_0033668

Removed

symbiont-mediated suppression of host autophagy http://purl.obolibrary.org/obo/GO_0140321

Removed

Added

symbiont-mediated suppression of host cholinergic synaptic transmission http://purl.obolibrary.org/obo/GO_0044761

Removed

Added

symbiont-mediated suppression of host exocytosis http://purl.obolibrary.org/obo/GO_0141157

Removed

Added

symbiont-mediated suppression of host gene expression http://purl.obolibrary.org/obo/GO_0039657

Removed

Added

symbiont-mediated suppression of host immune response http://purl.obolibrary.org/obo/GO_0052562

Removed

Added

symbiont-mediated suppression of host innate immune response http://purl.obolibrary.org/obo/GO_0052170

Added

symbiont-mediated suppression of host mRNA export from nucleus http://purl.obolibrary.org/obo/GO_0039522

Removed

Added

symbiont-mediated suppression of host mRNA processing http://purl.obolibrary.org/obo/GO_0039524

Removed

Added

symbiont-mediated suppression of host mRNA splicing http://purl.obolibrary.org/obo/GO_0046780

Added

symbiont-mediated suppression of host neutrophil extracellular trap formation http://purl.obolibrary.org/obo/GO_0141145

Removed

symbiont-mediated suppression of host phagosome maturation http://purl.obolibrary.org/obo/GO_0141158

Removed

Added

symbiont-mediated suppression of host programmed cell death http://purl.obolibrary.org/obo/GO_0052041

Removed

Added

symbiont-mediated suppression of host protein localization to phagocytic vesicle http://purl.obolibrary.org/obo/GO_0036522

Removed

Added

symbiont-mediated suppression of host reactive oxygen species generation http://purl.obolibrary.org/obo/GO_0141083

Removed

Added

symbiont-mediated suppression of host synaptic transmission http://purl.obolibrary.org/obo/GO_0044759

Removed

Added

symbiont-mediated suppression of host transcription http://purl.obolibrary.org/obo/GO_0039653

Removed

Added

symbiont-mediated suppression of host transcription initiation from RNA polymerase II promoter http://purl.obolibrary.org/obo/GO_0039602

Removed

Added

symbiont-mediated suppression of host translation http://purl.obolibrary.org/obo/GO_0039604

Removed

Added

symbiont-mediated suppression of host translation elongation http://purl.obolibrary.org/obo/GO_0141155

Removed

Added

symbiont-mediated suppression of host translation initiation http://purl.obolibrary.org/obo/GO_0039606

Removed

Added

symbiont-mediated suppression of host translation termination http://purl.obolibrary.org/obo/GO_0046773

Removed

Added

transformation of host cell by virus http://purl.obolibrary.org/obo/GO_0019087

Removed

Added

translocation of DNA into host http://purl.obolibrary.org/obo/GO_0044418

Removed

Added

viral mRNA export from host cell nucleus http://purl.obolibrary.org/obo/GO_0046784

Removed

Added

@raymond91125 raymond91125 merged commit f111ed6 into master Nov 12, 2024
6 checks passed
@raymond91125 raymond91125 deleted the issue-29159 branch November 12, 2024 17:40
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants