genozip-14.0.29

• Minor bug fixes and improvements

genozip-14.0.27

• Bug fix: A bug introduced in 14.0.3 occurred when compressing FASTQ files with --pair but without --md5 and resulted in falsely reporting that the file was verified despite not actually verifying it. This also occurred when running genounzip or genounzip --test on such files. There are no known issues with the actual compression of the files and it is now possible to go back and verify affected files with (fixed) genounzip --test.

genozip-14.0.26

• FASTQ: Better --optimize-DESC
• Fix broken genocat --fastq (converting a SAM/BAM file to FASTQ) (broken since v14)
• Fix broken --idxstats, --coverage, --sex (broken since v14)
• Implement fix to htscodecs (3rd party library) bug (samtools/htscodecs#71)

genozip-14.0.25

• BAM, VCF: Significantly reduced memory consumption during compression
• new option: --show-memory=PEAK - shows peak memory usage (normally show memory at end of execution)

genozip-14.0.24

• Fix license enforcement bug
• Update copyright

genozip-14.0.22

• VCF: better compression for GWAS-VCF files including support for GWAS-VCF fields in DVCF
• DVCF: better handling of some edge cases
• Change binaries in genozip-linux-x86_64.tar to be dynamically linked

genozip-14.0.21

bug fixes

genozip-14.0.19

• Registration flow adjustments for new website
• Change source code tree structure

genozip-14.0.18

• GFF/GVF/GTF: Better compression ; now also supports GFF version 2 and GTF
• License: relax conditions for academic license and update sections 2,3e,5,10 for clarity ; New sections 7,8.

genozip-14.0.17

• Website upgrade
• Better multi-threading for the case of compressing small files
• Automatic identification of file types piped into genozip (in many cases)
• Update of license term 3c
• Obsolete genounzip option --no-PG is canceled (it remains for genocat)
• VCF: Better compression of INFO/QD
• KRAKEN: new option: genozip --no-kmers - drop kmer info that is not needed for subsequent use of this file with --kraken
• Bug fixes