genozip-15.0.26

• Incremental compression improvements for VCF
• Support for --deep for BAM files with consensus reads
• minor bug fixes

15.0.25

• PacBio: further improvement of an additional 5-10% in compression of PacBio CCS and CLR files (BAM and FASTQ).
• incremental improvements in BAM and GTF compression
• Better compression of PacBio Onso short reads
• Better support of compression of .fasta.zip files (and all FASTA files compressed with ZIP)

genozip-15.0.24

• BAM and VCF: verification that the contig lengths in the reference file provided with --reference match those specified in the file header
• Agilent AGeNT Trimmer: better compression of FASTQ and BAM files with Trimmer tags
• --deep now supports data in which BAM sequences may be trimmed at either end relative to their FASTQ counterparts (previously, only trimming at the end of the read was supported)
• minor bug fixes

genozip-15.0.22

• BAM: better compression of BQ:Z
• Speed improvements and minor bug fixes
• Added Paid Academic license option & updated license terms accordingly

genozip-15.0.17

• Bug fixes and minor compression improvements

genozip-15.0.16

• FASTQ and FASTA: --multiseq option is canceled - a file consisting of sequences that are similar to each other is now detected as such automatically, triggering the appropriate methods
• BAM: better compression of Ultima Genomics files
• bug fixes

genozip-15.0.15

• Better compression of Ultima Genomics FASTQ and BAM files.
• BAM: better compression of files with a very large number of contigs (eg mapped against the transcriptome rather than the genome)
• BAM: better compression of MD:Z in files with many secondary alignments

genozip-15.0.14

• new option: --no-bgzf
• bug fixes

genozip-15.0.12

• VCF: better compression when using --reference
• genounzip of a file that was originally compressed with .bz2, .xz or .zip is now recompressed with .gz. Use --bgzf=0 to instruct genounzip to refrain from recompressing.
• bug fixes

genozip-15.0.11

• FASTQ: better compression for Ultima Genomics, Singular Genomics and Element Biosciences files
• BAM: better compression for Ultima Genomics files, Isaac files
• VCF: better compression of Isaac/starling files