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27 Open 12 Closed
27 Open 12 Closed
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Issues list

Testdata cannot be downloaded, is there a new URL?
#53 opened Oct 14, 2024 by haihao999
bam-readcount step stuck
#52 opened Mar 13, 2023 by StickHu
2
Regarding phasing variants
#51 opened Sep 26, 2022 by mdrishti
Anvio variability profile to DESMAN
#50 opened Apr 29, 2021 by malihaaziz
Python2 vs python3
#48 opened Sep 15, 2020 by tstraub89
6
Snakefile error
#47 opened Sep 11, 2020 by tstraub89
Pandas error in Filter_Variant step while using Desman snakemake version
#45 opened May 19, 2020 by osvatic
12
EMPTY OUTPUT from running desman
#44 opened Feb 24, 2020 by chiaramazzoni
8
Error in pileups_to_freq_table.py, pileup file NOT FOUND
#43 opened Feb 23, 2020 by chiaramazzoni
3
ERROR in GeneAssign.py in straintigs
#42 opened Nov 25, 2019 by lauren-mak
Memory requirements, number of strains
#41 opened Nov 19, 2019 by mherold1
Error in CalcGeneCov.py for genes with a single SNP
#40 opened Nov 4, 2019 by deropi
ERROR in estimateStrainCountDesman
#39 opened Jul 5, 2019 by osvatic
6
Questions about multiple steps on the pipeline
#37 opened Nov 8, 2018 by ilevade
2
Two issue with obtaining strain bins
#36 opened Nov 1, 2018 by xif033
Error executing process > 'estimateStrainCountDesman (19)'
#35 opened Oct 25, 2018 by xif033
2
How can I obtain preidentified 982 SCSGs?
#33 opened Oct 18, 2018 by kmin940
3
Questions regarding complex synthetic mock data.
#31 opened Oct 9, 2018 by kmin940
ERROR estimateStrainCountDesman (3) with desmanflow
#30 opened Sep 12, 2018 by xvazquezc
19
Error running automated workflow on test data
#28 opened Jul 2, 2018 by pug-ventures
2
Error when running Desman test: "Infer strains with Desman"
#25 opened Apr 11, 2018 by sacl07
1
ConfPlot.R issue
#21 opened Jan 30, 2018 by NielQC
KeyError: 13 when running DESMAN
#20 opened Jan 3, 2018 by alexcritschristoph
7
Cutoff for SNV uncertainty
#18 opened Sep 26, 2017 by liuxianghui
2
Issue with SelectContigsPos.pl and ExtractCountFrep.pl
#16 opened Jun 16, 2017 by gaohanlisa
2
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