bam-readcount step stuck

[StickHu]

Sorry to disturb you,but I was stuck in the bam-readcount step.

The code provided is that
`and run bam-readcount:

while read line
do
mag=$line

echo $mag

cd SplitBam
cd ${mag}

cp ../../Split/${mag}/${mag}_contigs.tsv ${mag}_contigs.tsv
samtools faidx ../../Split/${mag}/${mag}.fa

echo "${mag}_contigs.tsv"
mkdir ReadcountFilter
for bamfile in *_Filter.bam
do
    stub=${bamfile%_Filter.bam}`

Is ${mag}_contig.tsv the same as ${Cluster_1}/Cluster1_contig.tsv?
I will appreciate it if you can reply as soon as possible.

[StickHu]

And if I have several samples, i can't figure out what can do to make the protocol done. Can you help me about that?

[StickHu]

Besides, I can't download all the data provided,such as the test data or the simulated reads