OpenMSI

The software behind the mass spec portal at openmsi.nersc.gov.

Deployment Instructions

1. Install docker or podman on your local machine.
2. Git clone this repo to your local machine:

• git clone https://github.com/biorack/openmsi_web

2. Build and push images to registry.spin.nersc.gov:

• ./openmsi_web/build.sh --all

3. Git clone this repo to a cori login node:

• git clone https://github.com/biorack/openmsi_web

4. In the root directory of the openmsi_web repo, create the following files containing your TLS private key and certificate ((w/ issuer after, PEM encoded):

• .tls.key
• .tls.cert

5. Ensure the .tls.key file is only readable by you:

• `chmod 600 .tls.key

6. Run the deployment script: ./deploy.sh

• You'll need to pass it flags the location of the openmsi docker images on the repo.