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OpenMSI

The software behind the mass spec portal at openmsi.nersc.gov.

Deployment Instructions

  1. Install docker or podman on your local machine.
  2. Git clone this repo to your local machine:
  • git clone https://github.com/biorack/openmsi_web
  1. Build and push images to registry.spin.nersc.gov:
  • ./openmsi_web/build.sh --all
  1. Git clone this repo to a cori login node:
  • git clone https://github.com/biorack/openmsi_web
  1. In the root directory of the openmsi_web repo, create the following files containing your TLS private key and certificate ((w/ issuer after, PEM encoded):
  • .tls.key
  • .tls.cert
  1. Ensure the .tls.key file is only readable by you:
  • `chmod 600 .tls.key
  1. Run the deployment script: ./deploy.sh
  • You'll need to pass it flags the location of the openmsi docker images on the repo.