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[ENH] Extract graphs from impact page #585

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[ENH] Extract graphs from impact page #585

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4e6ac50
second pass impact page
iamdamion Dec 5, 2024
1208c23
Merge branch 'main' into 550-impact-second-pass
Remi-Gau Dec 5, 2024
656d630
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Dec 5, 2024
aefa0b6
Update docs/impact/dashboards.md
iamdamion Dec 5, 2024
df16fc9
Update docs/impact/dashboards.md
Remi-Gau Dec 5, 2024
79b2e1c
fix remark
Remi-Gau Dec 5, 2024
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fixes
Remi-Gau Dec 5, 2024
f1370e4
renamed measuring page
iamdamion Dec 5, 2024
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123 changes: 3 additions & 120 deletions docs/impact/index.md
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Expand Up @@ -37,126 +37,6 @@ adherence to FAIR principles (Findable, Accessible, Interoperable, and Reusable,
[Wilkinson, et al, 2016](https://www.nature.com/articles/sdata201618)) and to actively
lower barriers to adoption.

## Measuring BIDS Impact

### Datasets

Over the years, the number of shared datasets available to the public has
greatly increased. At its heart, adoption of the BIDS standard across datasets
aids in the sharing of data and collaboration of research through the standardization
of descriptive files names and the organization of data. BIDS organized datasets are
available through public repositories such as [Openneuro.org](https://openneuro.org/)
and the number of publicly available BIDS datasets continues to grow every year.

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "tmp/openneuro_data_growth.html"

### Citation Count

As the adoption of the BIDS standard across neuroimaging datasets has grown, so have
citations for work that uses BIDS data and BIDS apps. To aid in searching for publications
relevant to the BIDS standard, we have included some examples of BIDS references that are
centralized in a [zotero group](https://www.zotero.org/groups/5111637/bids)

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "tmp/citation_per_year.html"

### GitHub stars
GitHub stars quantify the number of users that have marked a repository as a favorite and have
chosen to follow the changes made to that repository. Below is a table of GitHub repos that are
associated with the BIDS standard and their star count. By tracking repo interest via GitHub stars,
we can quantify which BIDS-associated tools are of the highest interest to the research community.

| repository | stars |
| ----------------- | ------------------------------------------------------------------------------------------ |
| fmriprep | ![GitHub Repo stars](https://img.shields.io/github/stars/nipreps/fmriprep) |
| mriqc | ![GitHub Repo stars](https://img.shields.io/github/stars/nipreps/mriqc) |
| bids-standard | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/bids-specification) |
| bids-starter-kit | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/bids-starter-kit) |
| pybids | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/pybids) |
| qsiprep | ![GitHub Repo stars](https://img.shields.io/github/stars/PennLINC/qsiprep) |
| bids-matlab | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/bids-matlab) |
| statistical model | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/stats-models) |
| bids-validator | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/bids-validator) |

### Downloads

| package | downloads |
| ----------------- | ------------------------------------------------------------------------------------------------------------------------ |
| bids-validator | ![npm](https://img.shields.io/npm/dm/bids-validator) ![Docker Pulls](https://img.shields.io/docker/pulls/bids/validator) |
| pybids | ![PyPI - Downloads](https://img.shields.io/pypi/dm/pybids) |
| bids-schema | ![PyPI - Downloads](https://img.shields.io/pypi/dm/bidsschematools) |
| statistical model | ![PyPI - Downloads](https://img.shields.io/pypi/dm/bsmschema) |

For the number of docker pulls of specific BIDS apps, please check the
[BIDS app dashboard](https://bids-website.readthedocs.io/en/latest/tools/bids-apps.html).

### Contributors

Our list of contributors are captured in our
[contributor appendix](https://bids-specification.readthedocs.io/en/latest/99-appendices/01-contributors.html).
We update the contributor appendix every specification release. As of July 2023,
we have over 300 credited contributors.

The table below provides a brief account of the number of contributors per repository. Estimated demographics and affiliations
of contributors is also provided below.

| repository | all-contributors | github |
| ----------------- | --------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------- |
| bids-standard | ![GitHub contributors (via allcontributors.org)](https://img.shields.io/github/all-contributors/bids-standard/bids-specification) | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/bids-specification) |
| bids-starter-kit | ![GitHub contributors (via allcontributors.org)](https://img.shields.io/github/all-contributors/bids-standard/bids-starter-kit) | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/bids-starter-kit) |
| bids-validator | ![GitHub contributors (via allcontributors.org)](https://img.shields.io/github/all-contributors/bids-standard/bids-validator) | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/bids-validator) |
| pybids | | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/pybids) |
| bids-matlab | ![GitHub contributors (via allcontributors.org)](https://img.shields.io/github/all-contributors/bids-standard/bids-matlab) | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/bids-matlab) |
| statistical model | | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/stats-models) |

#### Gender of contributors

Guessed with [gender-guesser](https://pypi.org/project/gender-guesser/)

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "data/people/gender.md"

#### Contributors affiliations

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "data/people/affiliations.md"

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "tmp/affiliations.html"

### GitHub dependents

<!--
TODO add automation to update regularly.

pip install -U github-dependents-info
github-dependents-info --repo bids-standard/pybids --badgemarkdownfile ./dashboard.md
-->

<!-- gh-dependents-info-used-by-start -->

<!-- gh-dependents-info-used-by-end -->

| repository | dependents |
| ---------- | ----------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| pybids | [![](https://img.shields.io/static/v1?label=Used%20by&message=596&color=informational&logo=slickpic)](https://github.com/bids-standard/pybids/network/dependents) |

## BIDS History

Since its origin, the BIDS standard has revolutionized the way in which neuroimaging
Expand Down Expand Up @@ -209,6 +89,9 @@ We have a
that is crowdsourcing imaging centers, institutes, databases around the world
that have implemented BIDS as their organizational structure.

We also measured the general BIDS impact across multiple domains (datasets, citations...).
Read more on the [Impact Dashboards page](./measuring.md).

### Neurostars

We also track the interest and usage of the BIDS standard via discussions on Neurostars
Expand Down
103 changes: 103 additions & 0 deletions docs/impact/measuring.md
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@@ -0,0 +1,103 @@
# Measuring BIDS Impact

## Datasets

Over the years, the number of shared datasets available to the public has
greatly increased. At its heart, adoption of the BIDS standard across datasets
aids in the sharing of data and collaboration of research through the standardization
of descriptive files names and the organization of data. BIDS organized datasets are
available through public repositories such as [Openneuro.org](https://openneuro.org/)
and the number of publicly available BIDS datasets continues to grow every year.

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "tmp/openneuro_data_growth.html"

## Citation Count

As the adoption of the BIDS standard across neuroimaging datasets has grown, so have
citations for work that uses BIDS data and BIDS apps. To aid in searching for publications
relevant to the BIDS standard, we have included some examples of BIDS references that are
centralized in a [zotero group](https://www.zotero.org/groups/5111637/bids)

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "tmp/citation_per_year.html"

## GitHub stars

GitHub stars quantify the number of users that have marked a repository as a favorite and have
chosen to follow the changes made to that repository. Below is a table of GitHub repos that are
associated with the BIDS standard and their star count. By tracking repo interest via GitHub stars,
we can quantify which BIDS-associated tools are of the highest interest to the research community.

| repository | stars |
| ----------------- | ------------------------------------------------------------------------------------------ |
| fmriprep | ![GitHub Repo stars](https://img.shields.io/github/stars/nipreps/fmriprep) |
| mriqc | ![GitHub Repo stars](https://img.shields.io/github/stars/nipreps/mriqc) |
| bids-standard | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/bids-specification) |
| bids-starter-kit | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/bids-starter-kit) |
| pybids | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/pybids) |
| qsiprep | ![GitHub Repo stars](https://img.shields.io/github/stars/PennLINC/qsiprep) |
| bids-matlab | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/bids-matlab) |
| statistical model | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/stats-models) |
| bids-validator | ![GitHub Repo stars](https://img.shields.io/github/stars/bids-standard/bids-validator) |

## Downloads

| package | downloads |
| ----------------- | ------------------------------------------------------------------------------------------------------------------------ |
| bids-validator | ![npm](https://img.shields.io/npm/dm/bids-validator) ![Docker Pulls](https://img.shields.io/docker/pulls/bids/validator) |
| pybids | ![PyPI - Downloads](https://img.shields.io/pypi/dm/pybids) |
| bids-schema | ![PyPI - Downloads](https://img.shields.io/pypi/dm/bidsschematools) |
| statistical model | ![PyPI - Downloads](https://img.shields.io/pypi/dm/bsmschema) |

For the number of docker pulls of specific BIDS apps, please check the
[BIDS app dashboard](https://bids-website.readthedocs.io/en/latest/tools/bids-apps.html).

## Contributors

Our list of contributors are captured in our
[contributor appendix](https://bids-specification.readthedocs.io/en/latest/99-appendices/01-contributors.html).
We update the contributor appendix every specification release. As of July 2023,
we have over 300 credited contributors.

The table below provides a brief account of the number of contributors per repository. Estimated demographics and affiliations
of contributors is also provided below.

| repository | all-contributors | github |
| ----------------- | --------------------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------- |
| bids-standard | ![GitHub contributors (via allcontributors.org)](https://img.shields.io/github/all-contributors/bids-standard/bids-specification) | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/bids-specification) |
| bids-starter-kit | ![GitHub contributors (via allcontributors.org)](https://img.shields.io/github/all-contributors/bids-standard/bids-starter-kit) | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/bids-starter-kit) |
| bids-validator | | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/bids-validator) |
| pybids | | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/pybids) |
| bids-matlab | ![GitHub contributors (via allcontributors.org)](https://img.shields.io/github/all-contributors/bids-standard/bids-matlab) | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/bids-matlab) |
| statistical model | | ![GitHub Repo stars](https://img.shields.io/github/contributors/bids-standard/stats-models) |

### Gender of contributors

Guessed with [gender-guesser](https://pypi.org/project/gender-guesser/)

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "data/people/gender.md"

### Contributors affiliations

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "data/people/affiliations.md"

<!-- use snippet to include a file
https://facelessuser.github.io/pymdown-extensions/extensions/snippets/#snippets-notation
-->

--8<-- "tmp/affiliations.html"
1 change: 1 addition & 0 deletions mkdocs.yml
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Expand Up @@ -169,6 +169,7 @@ nav:
- Using MkDocs macros: extensions/macros_doc.md
- Impact:
- impact/index.md
- impact/measuring.md
- Merch: https://www.teepublic.com/user/bids
- Contact:
- contact/index.md
Expand Down
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