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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,22 @@ | ||
| ## | ||
| ## Makefile.am | ||
| ## | ||
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| AM_CPPFLAGS=-I$(top_srcdir)/include | ||
| AM_LDFLAGS= | ||
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| check_PROGRAMS = test_MRIScomputeBorderValues | ||
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| TESTS=run_test_MRIScomputeBorderValues | ||
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| test_MRIScomputeBorderValues_SOURCES=test_MRIScomputeBorderValues.cpp | ||
| test_MRIScomputeBorderValues_LDADD= $(addprefix $(top_builddir)/, $(LIBS_MGH)) | ||
| test_MRIScomputeBorderValues_LDFLAGS= $(OS_LDFLAGS) | ||
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| EXTRA_DIST=run_test_MRIScomputeBorderValues testdata.tar.gz | ||
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| EXCLUDE_FILES= | ||
| include $(top_srcdir)/Makefile.extra | ||
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| clean-local: | ||
| rm -f *.o |
52 changes: 52 additions & 0 deletions
52
utils/test/MRIScomputeBorderValues/run_test_MRIScomputeBorderValues
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,52 @@ | ||
| #!/bin/tcsh -f | ||
| # | ||
| # unit test for: MRIScomputeBorderValues | ||
| # - this script provides source and reference data for the testing binary | ||
| # | ||
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| umask 002 | ||
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| # extract testing data: | ||
| gunzip -c testdata.tar.gz | tar xvf - | ||
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| # | ||
| # run test_MRIScomputeBorderValues with the source and reference files: | ||
| # | ||
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| cd testdata | ||
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| setenv FREESURFER_HOME ../../distribution | ||
| setenv SUBJECTS_DIR "" | ||
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| set threads=( 1 8 ) | ||
| foreach num ($threads) | ||
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| setenv OMP_NUM_THREADS $num | ||
| echo | ||
| echo "running test_MRIScomputeBorderValues with $num thread(s)" | ||
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| set cmd=(../test_MRIScomputeBorderValues lh.surf mri_brain.mgz mri_smooth.mgz mri_aseg.mgz) | ||
| echo | ||
| $cmd | ||
| if ($status != 0) then | ||
| echo "test_MRIScomputeBorderValues FAILED" | ||
| exit 1 | ||
| endif | ||
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| end | ||
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| echo | ||
| echo | ||
| echo | ||
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| # cleanup: | ||
| cd .. | ||
| rm -rf testdata | ||
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| echo | ||
| echo "MRIScomputeBorderValues passed test" | ||
| exit 0 |
138 changes: 138 additions & 0 deletions
138
utils/test/MRIScomputeBorderValues/test_MRIScomputeBorderValues.cpp
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,138 @@ | ||
| // | ||
| // unit test for MRIScomputeBorderValues - located in utils/mrisurf.c | ||
| // | ||
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| #include <string> | ||
| #include <iostream> | ||
| #include <iomanip> | ||
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| #ifdef __cplusplus | ||
| extern "C" | ||
| { | ||
| #endif | ||
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| #include "error.h" | ||
| #include "utils.h" | ||
| #include "macros.h" | ||
| #include "mri.h" | ||
| #include "mrisurf.h" | ||
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| #ifdef __cplusplus | ||
| } | ||
| #endif | ||
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| int main(int argc, char *argv[]) | ||
| { | ||
| int err = 0; | ||
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| // check arg count: | ||
| if (argc != 5) | ||
| { | ||
| std::cerr << "ERROR: 4 args are required: mris mri_brain mri_smooth mri_aseg\n"; | ||
| exit(1); | ||
| } | ||
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| // read args: | ||
| std::string Progname = argv[0]; | ||
| std::string s_mris = argv[1]; | ||
| std::string s_brain = argv[2]; | ||
| std::string s_smooth = argv[3]; | ||
| std::string s_aseg = argv[4]; | ||
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| std::cout << Progname << std::endl; | ||
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| // read MRIS input: | ||
| std::cout << "reading " << s_mris << std::endl; | ||
| MRIS *mris = MRISread(s_mris.c_str()); | ||
| if (!mris) | ||
| { | ||
| std::cerr << "ERROR: could not read mris '" << s_mris << "'!\n"; | ||
| exit(ERROR_BADPARM); | ||
| } | ||
| // read MRI_BRAIN input: | ||
| std::cout << "reading " << s_brain << std::endl; | ||
| MRI *mri_brain = MRIread(s_brain.c_str()); | ||
| if (!mri_brain) | ||
| { | ||
| std::cerr << "ERROR: could not read mri_brain '" << s_brain << "'!\n"; | ||
| exit(ERROR_BADPARM); | ||
| } | ||
| // read MRI_SMOOTH input: | ||
| std::cout << "reading " << s_smooth << std::endl; | ||
| MRI *mri_smooth = MRIread(s_smooth.c_str()); | ||
| if (!mri_smooth) | ||
| { | ||
| std::cerr << "ERROR: could not read mri_smooth '" << s_smooth << "'!\n"; | ||
| exit(ERROR_BADPARM); | ||
| } | ||
| // read MRI_ASEG input: | ||
| std::cout << "reading " << s_aseg << std::endl; | ||
| MRI *mri_aseg = MRIread(s_aseg.c_str()); | ||
| if (!mri_aseg) | ||
| { | ||
| std::cerr << "ERROR: could not read mri_aseg '" << s_aseg << "'!\n"; | ||
| exit(ERROR_BADPARM); | ||
| } | ||
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| // run: | ||
| std::cout << "running MRIScomputeBorderValues...\n"; | ||
| err = MRIScomputeBorderValues(mris, mri_brain, mri_smooth, | ||
| 120.0, 112.28, 64.0, 53.24, 112.28, | ||
| 1.0, 10.0, NULL, 1, NULL, 0.0, 0, mri_aseg); | ||
| if (err) | ||
| { | ||
| std::cerr << "ERROR: could not run MRIScomputeBorderValues!\n"; | ||
| exit(err); | ||
| } | ||
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| // check averages of val, d, and mean across all vertices with nonzero val: | ||
| int vno, vtot = 0; | ||
| VERTEX *v; | ||
| float val_sum = 0, d_sum = 0, mean_sum = 0; | ||
| float val_avg, d_avg, mean_avg; | ||
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| for (vno = 0 ; vno < mris->nvertices ; vno++) | ||
| { | ||
| v = &mris->vertices[vno]; | ||
| if (!FZERO(v->val)) | ||
| { | ||
| val_sum += v->val; | ||
| d_sum += v->d; | ||
| mean_sum += v->mean; | ||
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| vtot++; | ||
| } | ||
| } | ||
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| val_avg = val_sum / vtot; | ||
| d_avg = d_sum / vtot; | ||
| mean_avg = mean_sum / vtot; | ||
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| std::cout << "\ncomputing stats for comparison:\n"; | ||
| std::cout << std::fixed; | ||
| std::cout << std::setprecision(8); | ||
| std::cout << "avg val: " << val_avg << std::endl; | ||
| std::cout << "avg d: " << d_avg << std::endl; | ||
| std::cout << "avg mean: " << mean_avg << std::endl; | ||
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| if (!FEQUAL(val_avg, 80.10114288)) { err = 1; } | ||
| if (!FEQUAL(d_avg, -0.26251045)) { err = 1; } | ||
| if (!FEQUAL(mean_avg, 6.81254005)) { err = 1; } | ||
| if (err == 1) | ||
| { | ||
| std::cout << "surface vertex stats DO NOT match reference data!\n"; | ||
| } | ||
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| // shut down: | ||
| MRISfree(&mris); | ||
| MRIfree(&mri_brain); | ||
| MRIfree(&mri_smooth); | ||
| MRIfree(&mri_aseg); | ||
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| exit(err); | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1 @@ | ||
| ../../../.git/annex/objects/QZ/9J/SHA256E-s4936477--7f6ee280388db93e286ded9f2a2c44ac236d556d44e8be56c505c17250c71911.tar.gz/SHA256E-s4936477--7f6ee280388db93e286ded9f2a2c44ac236d556d44e8be56c505c17250c71911.tar.gz |
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