Add project.json

Sage-Bionetworks · tschaffter · Dec 7, 2024 · Oct 19, 2022 · Oct 19, 2022 · Oct 20, 2022
commit 70c81085b340200fd70c62509d9223613c40342f
@@ -0,0 +1,20 @@
+{
+  "name": "sage-shiny-base",
+  "$schema": "../../../node_modules/nx/schemas/project-schema.json",
+  "projectType": "application",
+  "targets": {
+    "serve-detach": {
+      "executor": "nx:run-commands",
+      "options": {
+        "command": "docker/sage/serve-detach.sh {project-name}"
+      }
+    },
+    "scan-image": {
+      "executor": "nx:run-commands",
+      "options": {
+        "command": "trivy image ghcr.io/sage-bionetworks/{projectName}:local --quiet",
+        "color": true
+      }
+    }
+  }
+}
diff --git a/apps/sage/shiny-base/Dockerfile b/apps/sage/shiny-base/Dockerfile
 FROM ubuntu:22.04

 RUN apt-get -y update && apt-get -y upgrade
 # The following is necessary to avoid an interactive prompt when installing r-base
 RUN DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt-get -y install tzdata
 # instructions here: https://www.rstudio.com/products/shiny/download-server/ubuntu/
 RUN apt-get install -y r-base r-base-dev
 RUN apt-get install -y libssl-dev libcurl4-openssl-dev libxml2-dev jq pip sudo python3-venv

 # cmake is needed to install some packages
 RUN apt-get install -y cmake

 RUN Rscript -e "install.packages('shiny', repos='http://cran.rstudio.com/')"
 RUN apt-get install -y gdebi-core wget  && rm -rf /var/lib/apt/lists/*
 RUN wget https://download3.rstudio.org/ubuntu-18.04/x86_64/shiny-server-1.5.19.995-amd64.deb
 RUN gdebi --n shiny-server-1.5.19.995-amd64.deb
	FROM ubuntu:22.04

	RUN apt-get -y update && apt-get -y upgrade
Check failure on line 3 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint `DL3009 info: Delete the apt-get lists after installing something`
	# The following is necessary to avoid an interactive prompt when installing r-base
	RUN DEBIAN_FRONTEND=noninteractive TZ=Etc/UTC apt-get -y install tzdata
Check failure on line 5 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint DL3015 info: Avoid additional packages by specifying `--no-install-recommends`
	# instructions here: https://www.rstudio.com/products/shiny/download-server/ubuntu/
	RUN apt-get install -y r-base r-base-dev
Check failure on line 7 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint DL3059 info: Multiple consecutive `RUN` instructions. Consider consolidation. Check failure on line 7 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint DL3015 info: Avoid additional packages by specifying `--no-install-recommends`
	RUN apt-get install -y libssl-dev libcurl4-openssl-dev libxml2-dev jq pip sudo python3-venv
Check failure on line 8 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint DL3059 info: Multiple consecutive `RUN` instructions. Consider consolidation. Check failure on line 8 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint DL3015 info: Avoid additional packages by specifying `--no-install-recommends`

	# cmake is needed to install some packages
	RUN apt-get install -y cmake
Check failure on line 11 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint DL3015 info: Avoid additional packages by specifying `--no-install-recommends` Check failure on line 11 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint DL3059 info: Multiple consecutive `RUN` instructions. Consider consolidation.

	RUN Rscript -e "install.packages('shiny', repos='http://cran.rstudio.com/')"
Check failure on line 13 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint DL3059 info: Multiple consecutive `RUN` instructions. Consider consolidation.
	RUN apt-get install -y gdebi-core wget && rm -rf /var/lib/apt/lists/*
Check failure on line 14 in apps/sage/shiny-base/Dockerfile GitHub Actions / hadolint DL3015 info: Avoid additional packages by specifying `--no-install-recommends`
	RUN wget https://download3.rstudio.org/ubuntu-18.04/x86_64/shiny-server-1.5.19.995-amd64.deb
	RUN gdebi --n shiny-server-1.5.19.995-amd64.deb