feat(openchallenges): create endpoint to search EDAM concepts

[tschaffter]

Closes #2608

Description

Add endpoints to the Challenge Service to explore EDAM concepts.

This endpoint will be used by the OC web app to enable users to filter challenges using selected EDAM concepts. The filtering of challenges using EDAM concepts will be implemented in another PR to keep this PR lean.

cc: @rrchai

Changelog

• add the endpoint /edamConcepts to the API description
• add the endpoint /edamConcepts to the challenge service
• enable full-text search on EDAM concepts
• update the OC API client for Angular
• allow access to the new endpoint in the API gateway

Notes

For the new endpoint to be accessible via the API gateway, its config must be updated. See #2636.

Preview

List EDAM concepts:

GET {{basePath}}/edamConcepts
HTTP/1.1 200 

{
  "number": 0,
  "size": 100,
  "totalElements": 3473,
  "totalPages": 35,
  "hasNext": true,
  "hasPrevious": false,
  "edamConcepts": [
    {
      "id": 7,
      "classId": "http://edamontology.org/data_0831",
      "preferredLabel": "MeSH vocabulary"
    },
    {
      "id": 19,
      "classId": "http://edamontology.org/data_0851",
      "preferredLabel": "Sequence mask character"
    },

List the EDAM concepts that match the space-separated search terms "sequence":

GET {{basePath}}/edamConcepts?searchTerms=sequence
HTTP/1.1 200 

{
  "number": 0,
  "size": 100,
  "totalElements": 362,
  "totalPages": 4,
  "hasNext": true,
  "hasPrevious": false,
  "edamConcepts": [
    {
      "id": 805,
      "classId": "http://edamontology.org/data_2044",
      "preferredLabel": "Sequence"
    },
    {
      "id": 18,
      "classId": "http://edamontology.org/data_0850",
      "preferredLabel": "Sequence set"
    },
    {
      "id": 3073,
      "classId": "http://edamontology.org/topic_0158",
      "preferredLabel": "Sequence motifs"
    },

How to test

1. Remove all Docker artifacts: workspace-docker-stop && docker system prune -a
2. Build the OC images: openchallenges-build-images
3. Start the challenge service and its dependencies: nx serve-detach openchallenges-challenge-service
4. Try the EDAM example queries defined in apps/openchallenges/challenge-service/requests.http

[tschaffter]

I need to fix 9 issues identified by Sonar for the challenge service.

[rrchai]

Tested and LGTM!

[sonarqubecloud]

Quality Gate passed for 'openchallenges-app'

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud

[sonarqubecloud]

Quality Gate passed for 'openchallenges-challenge-service'

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud

[sonarqubecloud]

Quality Gate passed for 'openchallenges-organization-service'

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud

[sonarqubecloud]

Quality Gate passed for 'openchallenges-image-service'

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
No data about Coverage
No data about Duplication

See analysis details on SonarCloud