Additional top level variable replacements in job scripts

Refs NOAA-EMC#2332
KateFriedman-NOAA · Mar 6, 2024 · e652757 · e652757
1 parent e819bdf
commit e652757
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diff --git a/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG b/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG
@@ -36,7 +36,7 @@ export pgmout=OUTPUT.$$
 
 ########################################################
 # Execute the script.
-"${HOMEgfs}/scripts/exgfs_atmos_awips_20km_1p0deg.sh" "${fcsthrs}"
+"${SCRgfs}/exgfs_atmos_awips_20km_1p0deg.sh" "${fcsthrs}"
 export err=$?; err_chk
 ########################################################
 

diff --git a/jobs/JGFS_ATMOS_AWIPS_G2 b/jobs/JGFS_ATMOS_AWIPS_G2
@@ -35,7 +35,7 @@ export pgmout=OUTPUT.$$
 #########################################################
 mkdir -m 775 awips_g1
 cd ${DATA}/awips_g1
-${HOMEgfs}/scripts/exgfs_atmos_grib_awips.sh ${fcsthrs}
+"${SCRgfs}/exgfs_atmos_grib_awips.sh" "${fcsthrs}"
 export err=$?; err_chk
 
 ############################################

diff --git a/jobs/JGFS_ATMOS_FBWIND b/jobs/JGFS_ATMOS_FBWIND
@@ -29,7 +29,7 @@ mkdir -m 775 -p ${COMOUT} ${COMOUTwmo}
 
 ########################################################
 # Execute the script.
-${HOMEgfs}/scripts/exgfs_atmos_fbwind.sh
+${SCRgfs}/exgfs_atmos_fbwind.sh
 export err=$?;err_chk
 ########################################################
 

diff --git a/jobs/JGFS_ATMOS_PGRB2_SPEC_NPOESS b/jobs/JGFS_ATMOS_PGRB2_SPEC_NPOESS
@@ -28,7 +28,7 @@ mkdir -m 775 -p "${COM_ATMOS_GOES}"
 
 #############################################################
 # Execute the script
-"${HOMEgfs}/scripts/exgfs_atmos_grib2_special_npoess.sh"
+"${SCRgfs}/exgfs_atmos_grib2_special_npoess.sh"
 export err=$?;err_chk
 #############################################################
 

diff --git a/jobs/JGLOBAL_AERO_ANALYSIS_FINALIZE b/jobs/JGLOBAL_AERO_ANALYSIS_FINALIZE
@@ -31,7 +31,7 @@ mkdir -m 775 -p "${COM_CHEM_ANALYSIS}"
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASAEROFINALPY:-${HOMEgfs}/scripts/exglobal_aero_analysis_finalize.py}
+EXSCRIPT=${GDASAEROFINALPY:-${SCRgfs}/exglobal_aero_analysis_finalize.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_AERO_ANALYSIS_INITIALIZE b/jobs/JGLOBAL_AERO_ANALYSIS_INITIALIZE
@@ -30,7 +30,7 @@ mkdir -m 775 -p "${COM_CHEM_ANALYSIS}"
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASAEROINITPY:-${HOMEgfs}/scripts/exglobal_aero_analysis_initialize.py}
+EXSCRIPT=${GDASAEROINITPY:-${SCRgfs}/exglobal_aero_analysis_initialize.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_AERO_ANALYSIS_RUN b/jobs/JGLOBAL_AERO_ANALYSIS_RUN
@@ -16,7 +16,7 @@ source "${HOMEgfs}/ush/jjob_header.sh" -e "aeroanlrun" -c "base aeroanl aeroanlr
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASAERORUNSH:-${HOMEgfs}/scripts/exglobal_aero_analysis_run.py}
+EXSCRIPT=${GDASAERORUNSH:-${SCRgfs}/exglobal_aero_analysis_run.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_ATMENS_ANALYSIS_FINALIZE b/jobs/JGLOBAL_ATMENS_ANALYSIS_FINALIZE
@@ -23,7 +23,7 @@ mkdir -m 755 -p "${COM_ATMOS_ANALYSIS_ENS}"
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASATMENSFINALPY:-${HOMEgfs}/scripts/exglobal_atmens_analysis_finalize.py}
+EXSCRIPT=${GDASATMENSFINALPY:-${SCRgfs}/exglobal_atmens_analysis_finalize.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE b/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE
@@ -25,7 +25,7 @@ RUN=${GDUMP} YMD=${gPDY} HH=${gcyc} generate_com -rx \
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASATMENSINITPY:-${HOMEgfs}/scripts/exglobal_atmens_analysis_initialize.py}
+EXSCRIPT=${GDASATMENSINITPY:-${SCRgfs}/exglobal_atmens_analysis_initialize.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_ATMENS_ANALYSIS_RUN b/jobs/JGLOBAL_ATMENS_ANALYSIS_RUN
@@ -16,7 +16,7 @@ source "${HOMEgfs}/ush/jjob_header.sh" -e "atmensanlrun" -c "base atmensanl atme
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASATMENSRUNSH:-${HOMEgfs}/scripts/exglobal_atmens_analysis_run.py}
+EXSCRIPT=${GDASATMENSRUNSH:-${SCRgfs}/exglobal_atmens_analysis_run.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_ATMOS_POST_MANAGER b/jobs/JGLOBAL_ATMOS_POST_MANAGER
@@ -21,6 +21,6 @@ YMD=${PDY} HH=${cyc} generate_com -rx COM_ATMOS_HISTORY
 
 ########################################################
 # Execute the script.
-${HOMEgfs}/scripts/exglobal_atmos_pmgr.sh
+${SCRgfs}/exglobal_atmos_pmgr.sh
 ########################################################
 
diff --git a/jobs/JGLOBAL_ATMOS_PRODUCTS b/jobs/JGLOBAL_ATMOS_PRODUCTS
@@ -22,7 +22,7 @@ export PREFIX="${RUN}.t${cyc}z."
 
 ###############################################################
 # Run exglobal script
-"${HOMEgfs}/scripts/exglobal_atmos_products.sh"
+"${SCRgfs}/exglobal_atmos_products.sh"
 status=$?
 (( status != 0 )) && exit "${status}"
 

diff --git a/jobs/JGLOBAL_ATMOS_UPP b/jobs/JGLOBAL_ATMOS_UPP
@@ -19,7 +19,7 @@ if [[ ! -d ${COM_ATMOS_MASTER} ]]; then mkdir -m 775 -p "${COM_ATMOS_MASTER}"; f
 ###############################################################
 # Run relevant exglobal script
 
-"${HOMEgfs}/scripts/exglobal_atmos_upp.py"
+"${SCRgfs}/exglobal_atmos_upp.py"
 status=$?
 (( status != 0 )) && exit "${status}"
 

diff --git a/jobs/JGLOBAL_ATM_ANALYSIS_FINALIZE b/jobs/JGLOBAL_ATM_ANALYSIS_FINALIZE
@@ -33,7 +33,7 @@ mkdir -m 775 -p "${COM_ATMOS_ANALYSIS}"
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASATMFINALPY:-${HOMEgfs}/scripts/exglobal_atm_analysis_finalize.py}
+EXSCRIPT=${GDASATMFINALPY:-${SCRgfs}/exglobal_atm_analysis_finalize.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_ATM_ANALYSIS_INITIALIZE b/jobs/JGLOBAL_ATM_ANALYSIS_INITIALIZE
@@ -36,7 +36,7 @@ mkdir -m 775 -p "${COM_ATMOS_ANALYSIS}"
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASATMINITPY:-${HOMEgfs}/scripts/exglobal_atm_analysis_initialize.py}
+EXSCRIPT=${GDASATMINITPY:-${SCRgfs}/exglobal_atm_analysis_initialize.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_ATM_ANALYSIS_RUN b/jobs/JGLOBAL_ATM_ANALYSIS_RUN
@@ -18,7 +18,7 @@ source "${HOMEgfs}/ush/jjob_header.sh" -e "atmanlrun" -c "base atmanl atmanlrun"
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASATMRUNSH:-${HOMEgfs}/scripts/exglobal_atm_analysis_run.py}
+EXSCRIPT=${GDASATMRUNSH:-${SCRgfs}/exglobal_atm_analysis_run.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_ATM_PREP_IODA_OBS b/jobs/JGLOBAL_ATM_PREP_IODA_OBS
@@ -17,7 +17,7 @@ YMD=${PDY} HH=${cyc} generate_com -rx COM_OBS
 
 ###############################################################
 # Run relevant script
-EXSCRIPT=${BUFR2IODASH:-${HOMEgfs}/ush/run_bufr2ioda.py}
+EXSCRIPT=${BUFR2IODASH:-${USHgfs}/run_bufr2ioda.py}
 ${EXSCRIPT} "${PDY}${cyc}" "${RUN}" "${DMPDIR}" "${PARMgfs}/gdas/bufr2ioda" "${COM_OBS}/"
 status=$?
 [[ ${status} -ne 0 ]] && (echo "FATAL ERROR: Error executing ${EXSCRIPT}, ABORT!"; exit "${status}")

diff --git a/jobs/JGLOBAL_CLEANUP b/jobs/JGLOBAL_CLEANUP
@@ -3,7 +3,7 @@
 source "${HOMEgfs}/ush/preamble.sh"
 source "${HOMEgfs}/ush/jjob_header.sh" -e "cleanup" -c "base cleanup"
 
-"${HOMEgfs}/scripts/exglobal_cleanup.sh"
+"${SCRgfs}/exglobal_cleanup.sh"
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"
 

diff --git a/jobs/JGLOBAL_OCEANICE_PRODUCTS b/jobs/JGLOBAL_OCEANICE_PRODUCTS
@@ -15,7 +15,7 @@ YMD="${PDY}" HH="${cyc}" generate_com -rx "COM_${COMPONENT^^}_NETCDF"
 
 ###############################################################
 # Run exglobal script
-"${HOMEgfs}/scripts/exglobal_oceanice_products.py"
+"${SCRgfs}/exglobal_oceanice_products.py"
 status=$?
 (( status != 0 )) && exit "${status}"
 

diff --git a/jobs/JGLOBAL_PREP_OCEAN_OBS b/jobs/JGLOBAL_PREP_OCEAN_OBS
@@ -20,7 +20,7 @@ export PYTHONPATH=${HOMEgfs}/sorc/gdas.cd/ush:${PYTHONPATH}
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${GDASPREPOCNOBSPY:-${HOMEgfs}/ush/exglobal_prep_ocean_obs.py}
+EXSCRIPT=${GDASPREPOCNOBSPY:-${USHgfs}/exglobal_prep_ocean_obs.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_PREP_SNOW_OBS b/jobs/JGLOBAL_PREP_SNOW_OBS
@@ -25,7 +25,7 @@ RUN=${GDUMP} YMD=${gPDY} HH=${gcyc} generate_com -rx \
 
 ###############################################################
 # Run relevant script
-EXSCRIPT=${GDASSNOWPREPPY:-${HOMEgfs}/scripts/exglobal_prep_snow_obs.py}
+EXSCRIPT=${GDASSNOWPREPPY:-${SCRgfs}/exglobal_prep_snow_obs.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && (echo "FATAL ERROR: Error executing ${EXSCRIPT}, ABORT!"; exit "${status}")

diff --git a/jobs/JGLOBAL_SNOW_ANALYSIS b/jobs/JGLOBAL_SNOW_ANALYSIS
@@ -28,7 +28,7 @@ mkdir -m 775 -p "${COM_SNOW_ANALYSIS}" "${COM_CONF}"
 ###############################################################
 # Run relevant script
 
-EXSCRIPT=${SNOWANLPY:-${HOMEgfs}/scripts/exglobal_snow_analysis.py}
+EXSCRIPT=${SNOWANLPY:-${SCRgfs}/exglobal_snow_analysis.py}
 ${EXSCRIPT}
 status=$?
 [[ ${status} -ne 0 ]] && exit "${status}"

diff --git a/jobs/JGLOBAL_STAGE_IC b/jobs/JGLOBAL_STAGE_IC
@@ -10,7 +10,7 @@ rCDUMP=${CDUMP}
 export rCDUMP
 
 # Execute the Script
-"${HOMEgfs}/scripts/exglobal_stage_ic.sh"
+"${SCRgfs}/exglobal_stage_ic.sh"
 
 ##########################################
 # Remove the Temporary working directory

diff --git a/jobs/JGLOBAL_WAVE_GEMPAK b/jobs/JGLOBAL_WAVE_GEMPAK
@@ -19,7 +19,7 @@ if [[ ! -d ${COM_WAVE_GEMPAK} ]]; then mkdir -p "${COM_WAVE_GEMPAK}"; fi
 
 ########################################################
 # Execute the script.
-${HOMEgfs}/scripts/exgfs_wave_nawips.sh
+${SCRgfs}/exgfs_wave_nawips.sh
 status=$?
 [[ ${status} -ne 0 ]] && exit ${status}
 ###################################

diff --git a/jobs/JGLOBAL_WAVE_INIT b/jobs/JGLOBAL_WAVE_INIT
@@ -19,7 +19,7 @@ export wavempexec=${wavempexec:-"mpirun -n"}
 export wave_mpmd=${wave_mpmd:-"cfp"}
 
 # Execute the Script
-${HOMEgfs}/scripts/exgfs_wave_init.sh
+${SCRgfs}/exgfs_wave_init.sh
 
 ##########################################
 # Remove the Temporary working directory

diff --git a/jobs/JGLOBAL_WAVE_POST_BNDPNT b/jobs/JGLOBAL_WAVE_POST_BNDPNT
@@ -28,7 +28,7 @@ export DOBLL_WAV='NO' # Bulletin post
 export DOBNDPNT_WAV='YES'  # Do boundary points
 
 # Execute the Script
-${HOMEgfs}/scripts/exgfs_wave_post_pnt.sh
+${SCRgfs}/exgfs_wave_post_pnt.sh
 err=$?
 if [ ${err} -ne 0 ]; then
   echo "FATAL ERROR: ex-script of GWES_POST failed!"

diff --git a/jobs/JGLOBAL_WAVE_POST_BNDPNTBLL b/jobs/JGLOBAL_WAVE_POST_BNDPNTBLL
@@ -32,7 +32,7 @@ export DOBLL_WAV='YES' # Bulletin post
 export DOBNDPNT_WAV='YES'  #boundary points
 
 # Execute the Script
-${HOMEgfs}/scripts/exgfs_wave_post_pnt.sh
+${SCRgfs}/exgfs_wave_post_pnt.sh
 err=$?
 if [ ${err} -ne 0 ]; then
   echo "FATAL ERROR: ex-script of GFS_WAVE_POST_PNT failed!"

diff --git a/jobs/JGLOBAL_WAVE_POST_PNT b/jobs/JGLOBAL_WAVE_POST_PNT
@@ -29,7 +29,7 @@ export DOBNDPNT_WAV='NO'  #not boundary points
 
 
 # Execute the Script
-${HOMEgfs}/scripts/exgfs_wave_post_pnt.sh
+${SCRgfs}/exgfs_wave_post_pnt.sh
 err=$?
 if [ ${err} -ne 0 ]; then
   echo "FATAL ERROR: ex-script of GWES_POST failed!"

diff --git a/jobs/JGLOBAL_WAVE_POST_SBS b/jobs/JGLOBAL_WAVE_POST_SBS
@@ -26,7 +26,7 @@ export WAV_MOD_TAG=${RUN}wave${waveMEMB}
 export CFP_VERBOSE=1
 
 # Execute the Script
-${HOMEgfs}/scripts/exgfs_wave_post_gridded_sbs.sh
+${SCRgfs}/exgfs_wave_post_gridded_sbs.sh
 err=$?
 if [ ${err} -ne 0 ]; then
   echo "FATAL ERROR: ex-script of GWES_POST failed!"

diff --git a/jobs/JGLOBAL_WAVE_PRDGEN_BULLS b/jobs/JGLOBAL_WAVE_PRDGEN_BULLS
@@ -20,7 +20,7 @@ if [[ ! -d ${COM_WAVE_WMO} ]]; then mkdir -p "${COM_WAVE_WMO}"; fi
 ###################################
 # Execute the Script
 
-${HOMEgfs}/scripts/exgfs_wave_prdgen_bulls.sh
+${SCRgfs}/exgfs_wave_prdgen_bulls.sh
 status=$?
 [[ ${status} -ne 0 ]] && exit ${status}
 

diff --git a/jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED b/jobs/JGLOBAL_WAVE_PRDGEN_GRIDDED
@@ -22,7 +22,7 @@ mkdir -p "${COM_WAVE_WMO}"
 ###################################
 # Execute the Script
 ###################################
-${HOMEgfs}/scripts/exgfs_wave_prdgen_gridded.sh
+${SCRgfs}/exgfs_wave_prdgen_gridded.sh
 status=$?
 [[ ${status} -ne 0 ]] && exit ${status}
 

diff --git a/jobs/JGLOBAL_WAVE_PREP b/jobs/JGLOBAL_WAVE_PREP
@@ -22,7 +22,7 @@ generate_com -rx COM_RTOFS
 [[ ! -d ${COM_WAVE_PREP} ]] && mkdir -m 775 -p "${COM_WAVE_PREP}"
 
 # Execute the Script
-${HOMEgfs}/scripts/exgfs_wave_prep.sh
+${SCRgfs}/exgfs_wave_prep.sh
 
 ##########################################
 # Remove the Temporary working directory