Additional top level variable replacements

Including preamble command Refs NOAA-EMC#2332
KateFriedman-NOAA · Mar 6, 2024 · e819bdf · e819bdf
1 parent a2376ef
commit e819bdf
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diff --git a/scripts/exgdas_atmos_chgres_forenkf.sh b/scripts/exgdas_atmos_chgres_forenkf.sh
@@ -17,7 +17,7 @@
 #
 ################################################################################
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 #  Directories.
 pwd=$(pwd)
@@ -40,15 +40,15 @@ export NCP=${NCP:-"/bin/cp"}
 export NMV=${NMV:-"/bin/mv"}
 export NLN=${NLN:-"/bin/ln -sf"}
 export CHGRP_CMD=${CHGRP_CMD:-"chgrp ${group_name:-rstprod}"}
-export NCLEN=${NCLEN:-$HOMEgfs/ush/getncdimlen}
+export NCLEN=${NCLEN:-${USHgfs}/getncdimlen}
 
 # IAU
 DOIAU=${DOIAU:-"NO"}
 export IAUFHRS=${IAUFHRS:-"6"}
 
 # Dependent Scripts and Executables
 export APRUN_CHGRES=${APRUN_CHGRES:-${APRUN:-""}}
-export CHGRESNCEXEC=${CHGRESNCEXEC:-$HOMEgfs/exec/enkf_chgres_recenter_nc.x}
+export CHGRESNCEXEC=${CHGRESNCEXEC:-${EXECgfs}/enkf_chgres_recenter_nc.x}
 export NTHREADS_CHGRES=${NTHREADS_CHGRES:-1}
 APRUNCFP=${APRUNCFP:-""}
 

diff --git a/scripts/exgdas_atmos_nawips.sh b/scripts/exgdas_atmos_nawips.sh
@@ -10,7 +10,7 @@
 # echo "                    data on the CCS is properly protected."
 #####################################################################
 
-source "$HOMEgfs/ush/preamble.sh" "${2}"
+source "${USHgfs}/preamble.sh" "${2}"
 
 cd $DATA
 RUN2=$1

diff --git a/scripts/exgdas_atmos_verfozn.sh b/scripts/exgdas_atmos_verfozn.sh
@@ -1,6 +1,6 @@
 #! /usr/bin/env bash
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 ################################################################################
 # exgdas_atmos_verfozn.sh

diff --git a/scripts/exgdas_atmos_verfrad.sh b/scripts/exgdas_atmos_verfrad.sh
@@ -1,6 +1,6 @@
 #! /usr/bin/env bash
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 ################################################################################
 ####  UNIX Script Documentation Block

diff --git a/scripts/exgdas_enkf_earc.sh b/scripts/exgdas_enkf_earc.sh
@@ -1,6 +1,6 @@
 #! /usr/bin/env bash
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 ##############################################
 # Begin JOB SPECIFIC work
@@ -15,16 +15,16 @@ if [ "${EARCICS_CYC}" -lt 0 ]; then
   EARCICS_CYC=$((EARCICS_CYC+24))
 fi
 
-"${HOMEgfs}/ush/hpssarch_gen.sh" "${RUN}"
+"${USHgfs}/hpssarch_gen.sh" "${RUN}"
 status=$?
 if [ "${status}" -ne 0 ]; then
-   echo "${HOMEgfs}/ush/hpssarch_gen.sh ${RUN} failed, ABORT!"
+   echo "${USHgfs}/hpssarch_gen.sh ${RUN} failed, ABORT!"
    exit "${status}"
 fi
 
 cd "${ROTDIR}" || exit 2
 
-source "${HOMEgfs}/ush/file_utils.sh"
+source "${USHgfs}/file_utils.sh"
 
 ###################################################################
 # ENSGRP > 0 archives a group of ensemble members

diff --git a/scripts/exgdas_enkf_ecen.sh b/scripts/exgdas_enkf_ecen.sh
@@ -17,7 +17,7 @@
 #
 ################################################################################
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 # Directories.
 pwd=$(pwd)
@@ -31,16 +31,16 @@ ntiles=${ntiles:-6}
 # Utilities
 NCP=${NCP:-"/bin/cp -p"}
 NLN=${NLN:-"/bin/ln -sf"}
-NCLEN=${NCLEN:-$HOMEgfs/ush/getncdimlen}
+NCLEN=${NCLEN:-${USHgfs}/getncdimlen}
 
 # Scripts
 
 # Executables.
-GETATMENSMEANEXEC=${GETATMENSMEANEXEC:-$HOMEgfs/exec/getsigensmeanp_smooth.x}
-GETSFCENSMEANEXEC=${GETSFCENSMEANEXEC:-$HOMEgfs/exec/getsfcensmeanp.x}
-RECENATMEXEC=${RECENATMEXEC:-$HOMEgfs/exec/recentersigp.x}
-CALCINCNEMSEXEC=${CALCINCNEMSEXEC:-$HOMEgfs/exec/calc_increment_ens.x}
-CALCINCNCEXEC=${CALCINCEXEC:-$HOMEgfs/exec/calc_increment_ens_ncio.x}
+GETATMENSMEANEXEC=${GETATMENSMEANEXEC:-${EXECgfs}/getsigensmeanp_smooth.x}
+GETSFCENSMEANEXEC=${GETSFCENSMEANEXEC:-${EXECgfs}/getsfcensmeanp.x}
+RECENATMEXEC=${RECENATMEXEC:-${EXECgfs}/recentersigp.x}
+CALCINCNEMSEXEC=${CALCINCNEMSEXEC:-${EXECgfs}/calc_increment_ens.x}
+CALCINCNCEXEC=${CALCINCEXEC:-${EXECgfs}/calc_increment_ens_ncio.x}
 
 # Files.
 OPREFIX=${OPREFIX:-""}
@@ -66,14 +66,14 @@ else
 fi
 
 # global_chgres stuff
-CHGRESNEMS=${CHGRESNEMS:-$HOMEgfs/exec/enkf_chgres_recenter.x}
-CHGRESNC=${CHGRESNC:-$HOMEgfs/exec/enkf_chgres_recenter_nc.x}
+CHGRESNEMS=${CHGRESNEMS:-${EXECgfs}/enkf_chgres_recenter.x}
+CHGRESNC=${CHGRESNC:-${EXECgfs}/enkf_chgres_recenter_nc.x}
 NTHREADS_CHGRES=${NTHREADS_CHGRES:-24}
 APRUN_CHGRES=${APRUN_CHGRES:-""}
 
 # global_cycle stuff
-CYCLESH=${CYCLESH:-$HOMEgfs/ush/global_cycle.sh}
-export CYCLEXEC=${CYCLEXEC:-$HOMEgfs/exec/global_cycle}
+CYCLESH=${CYCLESH:-${USHgfs}/global_cycle.sh}
+export CYCLEXEC=${CYCLEXEC:-${EXECgfs}/global_cycle}
 APRUN_CYCLE=${APRUN_CYCLE:-${APRUN:-""}}
 NTHREADS_CYCLE=${NTHREADS_CYCLE:-${NTHREADS:-1}}
 export CYCLVARS=${CYCLVARS:-"FSNOL=-2.,FSNOS=99999.,"}

diff --git a/scripts/exgdas_enkf_post.sh b/scripts/exgdas_enkf_post.sh
@@ -17,7 +17,7 @@
 #
 ################################################################################
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 # Directories.
 pwd=$(pwd)
@@ -37,8 +37,8 @@ LEVS=${LEVS:-64}
 HYBENSMOOTH=${HYBENSMOOTH:-${FIXgfs}/gsi/global_hybens_smoothinfo.l${LEVS}.txt}
 
 # Executables.
-GETATMENSMEANEXEC=${GETATMENSMEANEXEC:-$HOMEgfs/exec/getsigensmeanp_smooth.x}
-GETSFCENSMEANEXEC=${GETSFCENSMEANEXEC:-$HOMEgfs/exec/getsfcensmeanp.x}
+GETATMENSMEANEXEC=${GETATMENSMEANEXEC:-${EXECgfs}/getsigensmeanp_smooth.x}
+GETSFCENSMEANEXEC=${GETSFCENSMEANEXEC:-${EXECgfs}/getsfcensmeanp.x}
 
 # Other variables.
 PREFIX=${PREFIX:-""}

diff --git a/scripts/exgdas_enkf_select_obs.sh b/scripts/exgdas_enkf_select_obs.sh
@@ -17,7 +17,7 @@
 #
 ################################################################################
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 # Directories.
 pwd=$(pwd)
@@ -26,7 +26,7 @@ pwd=$(pwd)
 export NLN=${NLN:-"/bin/ln -sf"}
 
 # Scripts.
-ANALYSISSH=${ANALYSISSH:-$HOMEgfs/scripts/exglobal_atmos_analysis.sh}
+ANALYSISSH=${ANALYSISSH:-${SCRgfs}/exglobal_atmos_analysis.sh}
 
 # Select obs
 export RUN_SELECT=${RUN_SELECT:-"YES"}

diff --git a/scripts/exgdas_enkf_sfc.sh b/scripts/exgdas_enkf_sfc.sh
@@ -17,7 +17,7 @@
 #
 ################################################################################
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 # Directories.
 pwd=$(pwd)
@@ -31,7 +31,7 @@ ntiles=${ntiles:-6}
 # Utilities
 NCP=${NCP:-"/bin/cp -p"}
 NLN=${NLN:-"/bin/ln -sf"}
-NCLEN=${NCLEN:-$HOMEgfs/ush/getncdimlen}
+NCLEN=${NCLEN:-${USHgfs}/getncdimlen}
 
 # Scripts
 
@@ -50,8 +50,8 @@ NMEM_ENS=${NMEM_ENS:-80}
 DOIAU=${DOIAU_ENKF:-"NO"}
 
 # Global_cycle stuff
-CYCLESH=${CYCLESH:-$HOMEgfs/ush/global_cycle.sh}
-export CYCLEXEC=${CYCLEXEC:-$HOMEgfs/exec/global_cycle}
+CYCLESH=${CYCLESH:-${USHgfs}/global_cycle.sh}
+export CYCLEXEC=${CYCLEXEC:-${EXECgfs}/global_cycle}
 APRUN_CYCLE=${APRUN_CYCLE:-${APRUN:-""}}
 NTHREADS_CYCLE=${NTHREADS_CYCLE:-${NTHREADS:-1}}
 export CYCLVARS=${CYCLVARS:-"FSNOL=-2.,FSNOS=99999.,"}

diff --git a/scripts/exgdas_enkf_update.sh b/scripts/exgdas_enkf_update.sh
@@ -17,15 +17,15 @@
 #
 ################################################################################
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 # Directories.
 pwd=$(pwd)
 
 # Utilities
 NCP=${NCP:-"/bin/cp -p"}
 NLN=${NLN:-"/bin/ln -sf"}
-NCLEN=${NCLEN:-$HOMEgfs/ush/getncdimlen}
+NCLEN=${NCLEN:-${USHgfs}/getncdimlen}
 USE_CFP=${USE_CFP:-"NO"}
 CFP_MP=${CFP_MP:-"NO"}
 nm=""
@@ -37,7 +37,7 @@ APRUN_ENKF=${APRUN_ENKF:-${APRUN:-""}}
 NTHREADS_ENKF=${NTHREADS_ENKF:-${NTHREADS:-1}}
 
 # Executables
-ENKFEXEC=${ENKFEXEC:-$HOMEgfs/exec/enkf.x}
+ENKFEXEC=${ENKFEXEC:-${EXECgfs}/enkf.x}
 
 # Cycling and forecast hour specific parameters
 CDATE=${CDATE:-"2001010100"}

diff --git a/scripts/exgfs_atmos_awips_20km_1p0deg.sh b/scripts/exgfs_atmos_awips_20km_1p0deg.sh
@@ -19,7 +19,7 @@
 # echo " "
 ###############################################################################
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 fcsthrs="$1"
 num=$#
@@ -38,7 +38,7 @@ fi
 cd "${DATA}" || exit 2
 
 # "Import" functions used in this script
-source "${HOMEgfs}/ush/product_functions.sh"
+source "${USHgfs}/product_functions.sh"
 
 ###############################################
 # Wait for the availability of the pgrb file

diff --git a/scripts/exgfs_atmos_fbwind.sh b/scripts/exgfs_atmos_fbwind.sh
@@ -14,7 +14,7 @@
 # echo "         Nov 2019 - B Vuong  Removed WINTEMV bulletin (retired)"
 #####################################################################
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 cd $DATA
 

diff --git a/scripts/exgfs_atmos_goes_nawips.sh b/scripts/exgfs_atmos_goes_nawips.sh
@@ -11,7 +11,7 @@
 # echo "C. Magee: 10/2013 - swap X and Y for rtgssthr Atl and Pac."
 #####################################################################
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 cd $DATA
 

diff --git a/scripts/exgfs_atmos_grib2_special_npoess.sh b/scripts/exgfs_atmos_grib2_special_npoess.sh
@@ -7,7 +7,7 @@
 # echo "-----------------------------------------------------"
 #####################################################################
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 cd $DATA
 

diff --git a/scripts/exgfs_atmos_grib_awips.sh b/scripts/exgfs_atmos_grib_awips.sh
@@ -21,7 +21,7 @@
 # echo "         FEB 2019 - Removed grid 225"
 #####################################################################
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 fcsthrs="$1"
 num=$#
@@ -40,7 +40,7 @@ fi
 cd "${DATA}/awips_g1" || exit 2
 
 # "Import" functions used in this script
-source "${HOMEgfs}/ush/product_functions.sh"
+source "${USHgfs}/product_functions.sh"
 
 ###############################################
 # Wait for the availability of the pgrb file
@@ -82,7 +82,7 @@ ${CNVGRIB} -g21 masterfile masterfile.grib1
 
 ln -s masterfile.grib1 fort.11
 
-"${HOMEgfs}/exec/overgridid.x" << EOF
+"${EXECgfs}/overgridid.x" << EOF
 255
 EOF
 
@@ -106,7 +106,7 @@ export FORT11="master.grbf${fcsthrs}"
 export FORT31="master.grbif${fcsthrs}"
 export FORT51="xtrn.awpgfs${fcsthrs}.${GRID}"
 #   $MKGFSAWPS < ${PARMgfs}/wmo/grib_awpgfs${fcsthrs}.${GRID} parm=KWBC >> $pgmout 2>errfile
-"${HOMEgfs}/exec/mkgfsawps.x" < "${PARMgfs}/wmo/grib_awpgfs${fcsthrs}.${GRID}" parm=KWBC >> "${pgmout}" 2>errfile
+"${EXECgfs}/mkgfsawps.x" < "${PARMgfs}/wmo/grib_awpgfs${fcsthrs}.${GRID}" parm=KWBC >> "${pgmout}" 2>errfile
 export err=$?; err_chk 
 ##############################
 # Post Files to ${COM_ATMOS_WMO}

diff --git a/scripts/exgfs_atmos_nawips.sh b/scripts/exgfs_atmos_nawips.sh
@@ -10,7 +10,7 @@
 # echo "                    data on the CCS is properly protected."
 #####################################################################
 
-source "${HOMEgfs}/ush/preamble.sh" "${2}"
+source "${USHgfs}/preamble.sh" "${2}"
 
 #### If EMC GFS PARA runs hourly file are not available, The ILPOST
 #### will set to 3 hour in EMC GFS PARA.
@@ -28,7 +28,7 @@ mkdir -p "${DATA_RUN}"
 cd "${DATA_RUN}" || exit 1
 
 # "Import" functions used in this script
-source "${HOMEgfs}/ush/product_functions.sh"
+source "${USHgfs}/product_functions.sh"
 
 #
 NAGRIB="${GEMEXE}/nagrib2"

diff --git a/scripts/exgfs_atmos_postsnd.sh b/scripts/exgfs_atmos_postsnd.sh
@@ -20,7 +20,7 @@
 #   9) 2019-12-18       Guang Ping Lou generalizing to reading in NetCDF or nemsio
 ################################################################
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 cd $DATA
 
@@ -44,7 +44,7 @@ export NINT3=${FHOUT_GFS:-3}
 
 rm -f -r "${COM_ATMOS_BUFR}"
 mkdir -p "${COM_ATMOS_BUFR}"
-GETDIM="${HOMEgfs}/ush/getncdimlen"
+GETDIM="${USHgfs}/getncdimlen"
 LEVS=$(${GETDIM} "${COM_ATMOS_HISTORY}/${RUN}.${cycle}.atmf000.${atmfm}" pfull)
 declare -x LEVS
 

diff --git a/scripts/exgfs_pmgr.sh b/scripts/exgfs_pmgr.sh
@@ -6,7 +6,7 @@
 #  This script monitors the progress of the gfs_fcst job
 #
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 hour=00
 TEND=384

diff --git a/scripts/exgfs_prdgen_manager.sh b/scripts/exgfs_prdgen_manager.sh
@@ -6,7 +6,7 @@
 #  This script monitors the progress of the gfs_fcst job
 #
 
-source "$HOMEgfs/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 hour=00
 TEND=384

diff --git a/scripts/exgfs_wave_init.sh b/scripts/exgfs_wave_init.sh
@@ -26,7 +26,7 @@
 # --------------------------------------------------------------------------- #
 # 0.  Preparations
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 # 0.a Basic modes of operation
 

diff --git a/scripts/exgfs_wave_nawips.sh b/scripts/exgfs_wave_nawips.sh
@@ -11,7 +11,7 @@
 #  March-2020 [email protected]                                   
 #####################################################################
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 #export grids=${grids:-'glo_30m at_10m ep_10m wc_10m ao_9km'} #Interpolated grids
 export grids=${grids:-'glo_30m'}  #Native grids

diff --git a/scripts/exgfs_wave_post_gridded_sbs.sh b/scripts/exgfs_wave_post_gridded_sbs.sh
@@ -30,7 +30,7 @@
 # --------------------------------------------------------------------------- #
 # 0.  Preparations
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 # 0.a Basic modes of operation
 

diff --git a/scripts/exgfs_wave_post_pnt.sh b/scripts/exgfs_wave_post_pnt.sh
@@ -32,7 +32,7 @@
 # --------------------------------------------------------------------------- #
 # 0.  Preparations
 
-source "${HOMEgfs}/ush/preamble.sh"
+source "${USHgfs}/preamble.sh"
 
 # 0.a Basic modes of operation