Create inost.py

added_reactions/inost.py

@@ -0,0 +1,41 @@
+# myo-inositol reactions
+mi3p__D = Metabolite(
+    "mi3p__D",
+    formula="C6H11O9P",
+    name="1D-myo-Inositol (3)-phosphate",
+    compartment="c"
+)
+g6p = model.metabolites.get_by_id("g6p_c")
+inost = model.metabolites.get_by_id("inost_c")
+pi = model.metabolites.get_by_id("pi_c")
+h2o = model.metabolites.get_by_id("h2o_c")
+
+mi3ps = Reaction("MI3PS")
+mi3ps.name = "Myo Inositol 1 phosphate synthase"
+mi3ps.add_metabolites(
+    {
+        g6p: -1.0,
+        mi3p__D: 1.0
+    }
+)
+
+mi3pp = Reaction("MI3PP")
+mi3pp.name = "Myo-inositol 1-phosphate"
+mi3pp.add_metabolites(
+    {
+        h2o: -1.0,
+        mi3p__D: -1.0,
+        inost: 1.0,
+        pi: 1.0
+    }
+)
+
+
+model.add_reactions(
+    [
+        mi3ps, mi3pp
+    ]
+)
+
+cobra.io.save_json_model(model, "model/iML1515_inost.json")
+model.optimize().objective_value