Create f1p.py

KarrLab · Apr 13, 2021 · 648e9ee · 648e9ee
1 parent 65ee563
commit 648e9ee
Showing 1 changed file with 32 additions and 0 deletions.
diff --git a/added_reactions/f1p.py b/added_reactions/f1p.py
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+# f1p reactions
+atp = model.metabolites.get_by_id("atp_c")
+fru = model.metabolites.get_by_id("fru_c")
+adp = model.metabolites.get_by_id("adp_c")
+f1p = model.metabolites.get_by_id("f1p_c")
+h = model.metabolites.get_by_id("h_c")
+
+khk = Reaction("KHK")
+khk.name = "Ketohexokinase"
+khk.add_metabolites(
+    {
+        adp: 1.0,
+        atp: -1.0,
+        f1p: 1.0,
+        fru: -1.0,
+        h: 1.0
+    }
+)
+
+biomass_rxn.add_metabolites(
+    {
+        f1p: -0.1030074288
+    }
+)
+
+model.add_reactions(
+    [
+        khk, biomass_rxn
+    ]
+)
+
+model.optimize().objective_value