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ibigen

[fix] correct import metadata NextStrain

Nov 6, 2022

c3ddca0 · Nov 6, 2022

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This branch is 2384 commits behind INSaFLU/INSaFLU:master.

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utils

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Folders and files

Name		Name	Last commit message	Last commit date
parent directory ..
__init__.py		__init__.py	[add] identify virus	Nov 1, 2017
collect_dataset_data.py		collect_dataset_data.py	[fix] phylocanvas color and dataset from nextstrain	Nov 1, 2022
collect_extra_data.py		collect_extra_data.py	[fix] phylocanvas color and dataset from nextstrain	Nov 1, 2022
coverage.py		coverage.py	[add] new type identification database	Dec 11, 2021
data_columns.py		data_columns.py	[fix] correct import metadata NextStrain	Nov 6, 2022
exceptions.py		exceptions.py	[add] alignment and tree in datasets	Jun 20, 2022
lock_atomic_transaction.py		lock_atomic_transaction.py	[fix] concurrence lock tables	Apr 9, 2020
mixed_infections_management.py		mixed_infections_management.py	[add] improve turn ON|OFF software	Dec 29, 2021
parse_coverage_file.py		parse_coverage_file.py	[add] add info messages, remove depth samtools ONT	Mar 22, 2021
parse_in_files.py		parse_in_files.py	[add] add sample/project per user	Jan 18, 2022
parse_in_files_nextstrain.py		parse_in_files_nextstrain.py	[fix] correct import metadata NextStrain	Nov 6, 2022
parse_out_files.py		parse_out_files.py	[add] type-subtype for ONT and nextclade	Jul 27, 2021
process_SGE.py		process_SGE.py	[fix] qstat path	Oct 27, 2022
proteins.py		proteins.py	[add] consensus add/remove to AllConsensus file	Feb 11, 2022
result.py		result.py	[add] New PAngolin version 4.X.X	Apr 26, 2022
session_variables.py		session_variables.py	[add] start create datasets	Jun 2, 2022
software.py		software.py	[fix] bug in adding reference metadata	Oct 28, 2022
software_minion.py		software_minion.py	[fix] Reinstate showing segments to reads in the sample details	Oct 19, 2022
software_pangolin.py		software_pangolin.py	Merge remote-tracking branch 'upstream/master' into develop	Sep 30, 2022
support_django_template.py		support_django_template.py	[add] split settings from metadata in lists	Jan 24, 2022
tree.py		tree.py	[fix] tree.py fail ManageDatabase	Jun 21, 2022
utils.py		utils.py	[add] nextstrain metadata	Oct 25, 2022
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