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# -*- coding: utf-8 -*- | ||
# Generated by Django 1.11.18 on 2022-10-25 16:26 | ||
from __future__ import unicode_literals | ||
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from django.db import migrations, models | ||
import django.db.models.deletion | ||
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class Migration(migrations.Migration): | ||
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dependencies = [ | ||
('datasets', '0011_dataset_number_passed_sequences'), | ||
] | ||
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operations = [ | ||
migrations.AlterField( | ||
model_name='uploadfiles', | ||
name='type_file', | ||
field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='upload_metadata_files', to='datasets.MetaKey'), | ||
), | ||
] |
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strain date virus region gisaid_epi_isl genbank_accession length segment sex age host vaccine status week latitude longitude type-subtype putative mixed-infection Lineage (Pangolin) classification Lineage Pangolin Scorpio Pangolin | ||
SARS_CoV_2_Wuhan_Hu_1_MN908947 2019-12-26 ncov Asia EPI_ISL_402125 MN908947 29903 genome ? ? ? ? ? ? ? ? ? ? ? ? ? | ||
to_4 2019-12-26 ncov Asia EPI_ISL_406798 LR757998 29866 genome ? ? ? ? ? ? ? ? ? ? ? ? ? | ||
ERR4082026_covid_minion 2022-06-20 ncov Europe ? ? 29903 genome ? ? ? ? ? ? ? Not assigned No B.1.1 ? ? ? | ||
ERR4082025_covid_minion 2022-06-20 ncov Europe ? ? 29905 genome ? ? ? ? ? ? ? Not assigned No B.1 ? ? ? | ||
ERR4569681 2022-06-20 ncov Europe ? ? 29910 genome ? ? ? ? ? ? ? Not assigned No B.1.1.301 ? ? ? | ||
test_covid_4082026 2022-06-20 ncov Europe ? ? 29903 genome ? ? ? ? ? ? ? ? NA (not applicable) ? NA (not applicable) B.1.1 ? | ||
ERR4082027_covid_minion 2022-02-20 ncov Europe ? ? 2d903 genome ? ? ? ? ? ? ? ? NA (not applicable) ? Not assigned B.1.1 ? | ||
ERR4082026_covid_minion_1 2022-06-20 ncov Europe ? ? 29903 genome ? s ? ? ? ? ? ? NA (not applicable) ? Not assigned B.1.1 ? | ||
ERR4082025_covid_minion_1 2022-06-20 ncov Europe ? ? 29903 genome ? 4 ? ? ? ? ? ? NA (not applicable) ? Not assigned B.1.93 ? |
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strain date genbank_accession region host vaccine status week latitude longitude type-subtype putative mixed-infection xpto new_columns | ||
second_stage_2__test_create_tree 2022-10-24 ? Europe ? ? ? ? ? ? ? ? f | ||
EVA001_S66 2022-10-19 ? Europe ? ? ? ? ? xpto, zpto ? xpto xpto g | ||
EVA002_S52 2022-10-19 ? Europe ? ? ? ? ? xpto, zpto ? xpto xpto h | ||
EVA003_S91 2022-10-24 ? Europe ? ? ? ? ? xpto, zpto ? xpto xpto j | ||
EVA011_S54 2022-10-21 ? Europe ? ? ? ? ? xpto, zpto ? xpto xpto |
12 changes: 6 additions & 6 deletions
12
...dataset_files/out_nextstrain_metadata.tsv → ...iles/out_nextstrain_metadata_expected.tsv
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"strain" "date" "genbank_accession" "region" "host" "vaccine status" "week" "latitude" "longitude" "type-subtype" "putative mixed-infection" "xpto" | ||
"second_stage_2__test_create_tree" "2022-10-19" "?" "Europe" "?" "?" "?" "?" "?" "?" "?" "?" | ||
"EVA001_S66" "2022-10-19" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" | ||
"EVA002_S52" "2022-10-19" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" | ||
"EVA003_S91" "2022-10-19" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" | ||
"EVA011_S54" "2022-10-19" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" | ||
"strain" "date" "genbank_accession" "region" "host" "vaccine status" "week" "latitude" "longitude" "type-subtype" "putative mixed-infection" "xpto" | ||
"second_stage_2__test_create_tree" "2022-10-24" "?" "Europe" "?" "?" "?" "?" "?" "?" "?" "?" | ||
"EVA001_S66" "2022-10-19" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" | ||
"EVA002_S52" "2022-10-19" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" | ||
"EVA003_S91" "2022-10-24" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" | ||
"EVA011_S54" "2022-10-21" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" |
6 changes: 6 additions & 0 deletions
6
static/tests/dataset_files/out_nextstrain_metadata_expected_2.tsv
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,6 @@ | ||
"strain" "date" "genbank_accession" "region" "host" "vaccine status" "week" "latitude" "longitude" "type-subtype" "putative mixed-infection" "xpto" "new_columns" | ||
"second_stage_2__test_create_tree" "2022-10-24" "?" "Europe" "?" "?" "?" "?" "?" "?" "?" "?" "f" | ||
"EVA001_S66" "2022-10-19" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" "g" | ||
"EVA002_S52" "2022-10-19" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" "h" | ||
"EVA003_S91" "2022-10-24" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" "j" | ||
"EVA011_S54" "2022-10-21" "?" "Europe" "?" "?" "?" "?" "?" "xpto, zpto" "?" "xpto xpto" "?" |
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