[add] split settings from metadata in lists

constants/constants.py

@@ -113,7 +113,11 @@ class Constants(object):
 	DATA_SET_GENERIC = "Generic"	## default name for a dataset
 
 	### NextClade link
-	NEXTCLADE_LINK = "https://clades.nextstrain.org/?input-fasta="
+	NEXTCLADE_LINK_sars_cov_2 = "https://clades.nextstrain.org/?dataset-name=sars-cov-2&input-fasta="
+	NEXTCLADE_LINK_A_H3N2 = "https://clades.nextstrain.org/?dataset-name=flu_h3n2_ha&input-fasta="
+	NEXTCLADE_LINK_A_H1N1 = "https://clades.nextstrain.org/?dataset-name=flu_h1n1pdm_ha&input-fasta="
+	NEXTCLADE_LINK_B_Yamagata = "https://clades.nextstrain.org/?dataset-name=flu_yam_ha&input-fasta="
+	NEXTCLADE_LINK_B_Victoria = "https://clades.nextstrain.org/?dataset-name=flu_vic_ha&input-fasta="
 	AUSPICE_LINK = "https://auspice.us/"
 
 	## NUMBER OF SETs to paginate

constants/software_names.py

@@ -96,10 +96,10 @@ class SoftwareNames(object):
 					"Number of reads R1", "Number of reads R2",
 					"Average read length R1", "Average read length R2",
 					"STDEV read length R1", "STDEV read length R2",
-					"Total bases",]
+					"Total reads",]
 	SOFTWARE_ILLUMINA_stat_collect_show_percentage = [
 					"Number of reads R1", "Number of reads R2",
-					"Total bases",]
+					"Total reads",]
 
 	SOFTWARE_RabbitQC = os.path.join(settings.DIR_SOFTWARE, "RabbitQC/rabbit_qc")
 	SOFTWARE_RabbitQC_name = "RabbitQC"

fluwebvirus/settings.py

@@ -250,6 +250,8 @@
 
 DATE_FORMAT_FOR_TABLE = '%d-%m-%Y'
 DATETIME_FORMAT_FOR_TABLE = '%d-%m-%Y %H:%M'
+DATE_FORMAT_FOR_SHOW = '%Y-%m-%d'
+DATETIME_FORMAT_FOR_TABLE_SHOW = '%Y-%m-%d %H:%M'
 DATETIME_FORMAT = '%d-%m-%Y %H:%M'
 DATETIME_INPUT_FORMATS = ['%d-%m-%Y', '%d/%m/%Y']	## it's necessary to look which kind of date is returned from forms to correct the format
 

fluwebvirus/settings_test.py

@@ -230,6 +230,8 @@
 
 DATE_FORMAT_FOR_TABLE = '%d-%m-%Y'
 DATETIME_FORMAT_FOR_TABLE = '%d-%m-%Y %H:%M'
+DATE_FORMAT_FOR_SHOW = '%Y-%m-%d'
+DATETIME_FORMAT_FOR_TABLE_SHOW = '%Y-%m-%d %H:%M'
 DATETIME_FORMAT = '%d-%m-%Y %H:%M'
 DATETIME_INPUT_FORMATS = ['%d-%m-%Y', '%d/%m/%Y']	## it's necessary to look which kind of date is returned from forms to correct the format
 

managing_files/management/commands/collect_global_files.py

@@ -7,7 +7,7 @@
 from managing_files.models import Project
 from utils.collect_extra_data import CollectExtraData
 from django.contrib.auth.models import User
-import logging
+import logging, datetime
 
 class Command(BaseCommand):
 	'''
@@ -38,12 +38,15 @@ def handle(self, *args, **options):
 		self.stdout.write("Starting for project_id: " + str(project_id))
 		self.logger_production.info("Starting for project_id: " + str(project_id))
 		self.logger_debug.info("Starting for project_id: " + str(project_id))
-
-		print(list(Project.objects.all()))
 		try:
 			project = Project.objects.get(pk=project_id)
 			if (user_id == None): user = project.owner
 			else: user = User.objects.get(pk=user_id)
+
+			### change date
+			project.last_change_date = datetime.datetime.now()
+			project.save()
+
 			collect_extra_data.collect_extra_data_for_project(project, user)
 			self.stdout.write("End")
 		except Project.DoesNotExist as e:

managing_files/models.py

@@ -788,6 +788,8 @@ class Project(models.Model):
 	PERCENTAGE_validated_minor_variants = 51		## only pass <= 50
 	PROJECT_FILE_NAME_SAMPLE_RESULT_TSV = "Sample_list.tsv" 	### first column ID instead of 'sample name' to be compatible with Phandango e Microreact
 	PROJECT_FILE_NAME_SAMPLE_RESULT_CSV = "Sample_list.csv" 	### first column ID instead of 'sample name' to be compatible with Phandango e Microreact
+	PROJECT_FILE_NAME_SAMPLE_RESULT_SETTINGS_TSV = "Sample_list_settings.tsv" 	### first column ID instead of 'sample name' to be compatible with Phandango e Microreact
+	PROJECT_FILE_NAME_SAMPLE_RESULT_SETTINGS_CSV = "Sample_list_settings.csv" 	### first column ID instead of 'sample name' to be compatible with Phandango e Microreact
 	PROJECT_FILE_NAME_SAMPLE_RESULT_CSV_simple = "Sample_list_simple.csv" 	### first column must be ID because of manging_files.ajax_views.show_phylo_canvas
 																			### this file is only used for to show the manging_files.views.ShowSampleProjectsView
 	PROJECT_FILE_NAME_SAMPLE_RESULT_json = "Sample_list_simple.json" 	### first column ID instead of 'sample name' to be compatible with Phandango e Microreact, to download to 
@@ -796,6 +798,8 @@ class Project(models.Model):
 
 	PROJECT_FILE_NAME_Pangolin_lineage = "PangolinLineage.csv"			### has the result of pangolin lineage
 
+	PROJECT_FILE_NAME_all_files_zipped = "AllFiles.zip"					### Several files zipped
+
 	## put the type file here to clean if there isn't enough sequences to create the trees and alignments
 	vect_clean_file = [PROJECT_FILE_NAME_MAFFT, PROJECT_FILE_NAME_FASTTREE,\
 					PROJECT_FILE_NAME_FASTTREE_tree,\
@@ -877,6 +881,9 @@ def _clean_name(self, name_to_clean, dict_to_clean = { ' ' : '_', '(' : '', ')'
 			name_to_clean = name_to_clean.replace(key, dict_to_clean[key])
 		return name_to_clean
 
+	def get_clean_project_name(self):
+		return self._clean_name(self.name)
+
 	def get_global_file_by_project(self, type_path, file_name):
 		"""
 		type_path: constants.TypePath -> MEDIA_ROOT, MEDIA_URL

managing_files/views.py

@@ -1,6 +1,7 @@
 # Create your views here.
 
 import ntpath, os, logging, sys
+from datetime import datetime
 from django.views import generic
 from braces.views import LoginRequiredMixin, FormValidMessageMixin
 from django.urls import reverse_lazy
@@ -41,6 +42,7 @@
 from django.template.defaultfilters import filesizeformat
 from settings.constants_settings import ConstantsSettings
 from settings.models import Software as SoftwareSettings
+from utils.support_django_template import get_link_for_dropdown_item
 
 # http://www.craigderington.me/generic-list-view-with-django-tables/
 
@@ -254,16 +256,12 @@ def get_context_data(self, **kwargs):
 		## list of all samples in CSV and TSV
 		csv_file = self.utils.get_sample_list_by_user(self.request.user.id, "MEDIA_ROOT", FileExtensions.FILE_CSV)
 		if os.path.exists(csv_file):
-			context['list_samples_file_csv'] = mark_safe('<a rel="nofollow" href="' + \
-				self.utils.get_sample_list_by_user(self.request.user.id, "MEDIA_URL", FileExtensions.FILE_CSV) +\
-				'" download="' + os.path.basename(csv_file) + '" class="dropdown-item"> Download - ' +\
-				os.path.basename(csv_file) + '</a>')
+			context['list_samples_file_csv'] = get_link_for_dropdown_item(
+				self.utils.get_sample_list_by_user(self.request.user.id, "MEDIA_URL", FileExtensions.FILE_CSV))
 		tsv_file = self.utils.get_sample_list_by_user(self.request.user.id, "MEDIA_ROOT", FileExtensions.FILE_TSV)
 		if os.path.exists(tsv_file):
-			context['list_samples_file_tsv'] = mark_safe('<a rel="nofollow" href="' + \
-							self.utils.get_sample_list_by_user(self.request.user.id, "MEDIA_URL", FileExtensions.FILE_TSV) +\
-							'" download="' + os.path.basename(tsv_file) + '" class="dropdown-item"> Download - ' +\
-							os.path.basename(tsv_file) + '</a>')
+			context['list_samples_file_tsv'] = get_link_for_dropdown_item(
+				self.utils.get_sample_list_by_user(self.request.user.id, "MEDIA_URL", FileExtensions.FILE_TSV))
 
 		context['table'] = table
 		context['nav_sample'] = True
@@ -1020,7 +1018,7 @@ def get_context_data(self, **kwargs):
 					context['href_trimmonatic_quality_2'] = "Not available"
 
 				#### data from illumina stat
-				stat_data = self.software.get_stats_from_sample_reads(sample)
+				stat_data, total_reads = self.software.get_stats_from_sample_reads(sample)
 				if not stat_data is None: context['data_illuminastat'] = stat_data
 
 			else:	### other like Minion
@@ -1036,7 +1034,7 @@ def get_context_data(self, **kwargs):
 				else: context['href_trimmonatic_quality_1'] = "Not available"
 
 				#### data from nanoStat
-				stat_data = self.software.get_stats_from_sample_reads(sample)
+				stat_data, total_reads = self.software.get_stats_from_sample_reads(sample)
 				if not stat_data is None: context['data_nanostat'] = stat_data
 
 			### software
@@ -1598,9 +1596,43 @@ def get_context_data(self, **kwargs):
 		## Files
 		context['coverage_file'] = project.get_global_file_by_project_web(Project.PROJECT_FILE_NAME_COVERAGE)
 		context['main_variations_snippy_file'] = project.get_global_file_by_project_web(Project.PROJECT_FILE_NAME_TAB_VARIATIONS_SNIPPY)
-		context['sample_file_result_csv'] = project.get_global_file_by_project_web(Project.PROJECT_FILE_NAME_SAMPLE_RESULT_CSV)
-		context['sample_file_result_tsv'] = project.get_global_file_by_project_web(Project.PROJECT_FILE_NAME_SAMPLE_RESULT_TSV)
-		context['sample_file_all_consensus'] = project.get_global_file_by_project_web(Project.PROJECT_FILE_NAME_SAMPLE_RESULT_all_consensus)
+
+		## coverage
+		if os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_COVERAGE)):
+			context['samples_file_coverage'] = get_link_for_dropdown_item(
+				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_COVERAGE))
+		## variants
+		if os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_TAB_VARIATIONS_SNIPPY)):
+			context['samples_file_variants'] = get_link_for_dropdown_item(
+				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_TAB_VARIATIONS_SNIPPY))
+		## minor intra host
+		if os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_TAB_VARIATIONS_FREEBAYES)):
+			context['samples_file_minor_intra_host'] = get_link_for_dropdown_item(
+				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_TAB_VARIATIONS_FREEBAYES))
+		## all files zipped
+		if os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_all_files_zipped)):
+			context['download_all_files'] = get_link_for_dropdown_item(
+				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_all_files_zipped),
+				"{}_{}_{}".format(os.path.splitext(Project.PROJECT_FILE_NAME_all_files_zipped)[0],
+				project.get_clean_project_name(), datetime.now().strftime(settings.DATE_FORMAT_FOR_SHOW)))
+
+
+		if os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_CSV)):
+			context['sample_file_result_csv'] = get_link_for_dropdown_item(
+				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_CSV))
+		if os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_TSV)):
+			context['sample_file_result_tsv'] = get_link_for_dropdown_item(
+				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_TSV))
+		if os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_SETTINGS_CSV)):
+			context['samples_file_settings_statistics_csv'] = get_link_for_dropdown_item(
+				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_SETTINGS_CSV))
+		if os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_SETTINGS_TSV)):
+			context['samples_file_settings_statistics_tsv'] = get_link_for_dropdown_item(
+				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_SETTINGS_TSV))
+
+		if os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_all_consensus)):
+			context['sample_file_all_consensus'] = get_link_for_dropdown_item(
+				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_all_consensus))
 
 		### need to test because in the past this file was not created
 		context['freebays_variations_50_file'] = project.get_global_file_by_project_web(Project.PROJECT_FILE_NAME_TAB_VARIATIONS_FREEBAYES)
@@ -1633,21 +1665,17 @@ def get_context_data(self, **kwargs):
 			(os.path.exists(file_pangolin_result) and software_pangolin.pangolin_results_out_date(project)) ):
 			context['update_pangolin'] = True
 			context['update_pangolin_message'] = mark_safe(software_pangolin.get_update_message(project))
-
+
+		## pangolin file			
 		if (project.number_passed_sequences > 0 and os.path.exists(file_pangolin_result)):
-			context['pangolin_lineage'] = project.get_global_file_by_project_web(Project.PROJECT_FILE_NAME_Pangolin_lineage)
+			context['pangolin_lineage'] = get_link_for_dropdown_item(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_Pangolin_lineage))
 
 		#### nextclade link
-#		if (is_sars_cov_2 and \
-#				os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_all_consensus)) and \
-#				settings.SHOW_NEXTCLADE_LINK):		## docker versions doesn't show NextClade link
 		if (os.path.exists(project.get_global_file_by_project(TypePath.MEDIA_ROOT, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_all_consensus)) and \
 				settings.SHOW_NEXTCLADE_LINK):		## docker versions doesn't show NextClade link
-			context['nextclade_link'] = "{}{}://{}{}".format(
-				Constants.NEXTCLADE_LINK,
-				settings.WEB_SITE_HTTP_NAME,
-				get_current_site(self.request),
-				project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_all_consensus))
+			context = _get_constext_nextclade(
+					project.get_global_file_by_project(TypePath.MEDIA_URL, Project.PROJECT_FILE_NAME_SAMPLE_RESULT_all_consensus),
+					context, get_current_site(self.request), is_sars_cov_2)
 
 		return context
 
@@ -1959,22 +1987,48 @@ def get_context_data(self, **kwargs):
 			context['software_used'] = software_used	
 
 			#### nextclade link
-#			software_pangolin = SoftwarePangolin()
-#			if (software_pangolin.is_ref_sars_cov_2(project_sample.project.reference.get_reference_fasta(TypePath.MEDIA_ROOT)) and \
-#					os.path.exists(project_sample.get_consensus_file(TypePath.MEDIA_ROOT)) and \
-#					settings.SHOW_NEXTCLADE_LINK):		## docker versions doesn't show NextClade link
+			software_pangolin = SoftwarePangolin()
+			is_sars_cov_2 = software_pangolin.is_ref_sars_cov_2(project_sample.project.reference.get_reference_fasta(TypePath.MEDIA_ROOT))
 			if (os.path.exists(project_sample.get_consensus_file(TypePath.MEDIA_ROOT)) and \
 					settings.SHOW_NEXTCLADE_LINK):		## docker versions doesn't show NextClade link
-				context['nextclade_link'] = "{}{}://{}{}".format(
-					Constants.NEXTCLADE_LINK,
-					settings.WEB_SITE_HTTP_NAME,
-					get_current_site(self.request),
-					project_sample.get_consensus_file(TypePath.MEDIA_URL))
+				context = _get_constext_nextclade(project_sample.get_consensus_file(TypePath.MEDIA_URL),
+						context, get_current_site(self.request), is_sars_cov_2)
 
 		except ProjectSample.DoesNotExist:
 			context['error_cant_see'] = 1
 		return context
 
+def _get_constext_nextclade(media_url_path, context, current_site, is_sars_cov_2):
+
+	## sarscov 2
+	if (is_sars_cov_2):
+		context['nextclade_link_covid'] = "{}{}://{}{}".format(
+			Constants.NEXTCLADE_LINK_sars_cov_2,
+			settings.WEB_SITE_HTTP_NAME,
+			current_site,
+			media_url_path)
+	else:
+		context['nextclade_link_a_h3n2'] = "{}{}://{}{}".format(
+				Constants.NEXTCLADE_LINK_A_H3N2,
+				settings.WEB_SITE_HTTP_NAME,
+				current_site,
+				media_url_path)
+		context['nextclade_link_a_h1n1'] = "{}{}://{}{}".format(
+				Constants.NEXTCLADE_LINK_A_H1N1,
+				settings.WEB_SITE_HTTP_NAME,
+				current_site,
+				media_url_path)
+		context['nextclade_link_b_yamagata'] = "{}{}://{}{}".format(
+				Constants.NEXTCLADE_LINK_B_Yamagata,
+				settings.WEB_SITE_HTTP_NAME,
+				current_site,
+				media_url_path)
+		context['nextclade_link_b_victoria'] = "{}{}://{}{}".format(
+				Constants.NEXTCLADE_LINK_B_Victoria,
+				settings.WEB_SITE_HTTP_NAME,
+				current_site,
+				media_url_path)
+	return context
 
 def is_all_check_box_in_session(vect_check_to_test, request):
 	"""

static/tests/global_project/AllProjects_1.csv

@@ -1,3 +1,3 @@
 Name,#samples,Reference,Last access,Created
-several_names_test_create_tree_6000,4,second_stage_2_ test_create_tree,14-12-2002 20:30
+several_names_test_create_tree_6000,4,second_stage_2_ test_create_tree,2002-12-14 20:30
 Total Projects,1

static/tests/global_project/AllProjects_1.tsv

@@ -1,3 +1,3 @@
 "Name"	"#samples"	"Reference"	"Last access"	"Created"
-"several_names_test_create_tree_6000"	"4"	"second_stage_2_ test_create_tree"	"14-12-2002 20:30"
+"several_names_test_create_tree_6000"	"4"	"second_stage_2_ test_create_tree"	"2002-12-14 20:30"
 "Total Projects"	"1"

static/tests/global_project/AllSamples_1.csv

@@ -1,7 +1,7 @@
-,,,,,,,,,,,,,Trimmo. stats.,Trimmo. stats.,Trimmo. stats.,Trimmo. stats.,Trimmo. stats.,,,,,
-sample,fastq1,fastq2,data set,vaccine status,week,onset date,collection date,lab reception date,latitude,longitude,type-subtype,xpto_1,Technology,Sample Down sized,Input Read Pairs,Both Surviving,Forward Only Surviving,Reverse Only Surviving,Dropped,FastQC,Trimmomatic,Uploaded Date,#Projects,Project Names
+,,,,,,,,,,,,,,,Trimmo. stats.,Trimmo. stats.,Trimmo. stats.,Trimmo. stats.,Trimmo. stats.,,,,,
+sample,fastq1,fastq2,data set,vaccine status,week,onset date,collection date,lab reception date,latitude,longitude,classification,xpto_1,Technology,Sample Down sized,Input Read Pairs,Both Surviving,Forward Only Surviving,Reverse Only Surviving,Dropped,FastQC,Trimmomatic,Uploaded Date,#Projects,Project Names
 EVA011_S54,EVA011_S54_L001_R1_001.fastq.gz,EVA011_S54_L001_R2_001.fastq.gz,,,,,,,,,"xpto, zpto",xpto_1 xpto_1,Illumina,False,,,,,,FastQC-0.11.9; (let's go again),Trimmomatic-0.39; (let's go again)/Trimmomatic-0.39; (let's go againsecond version trimmomatic),Date,1,several_names_test_create_tree_6000
-EVA003_S91,EVA003_S91_L001_R1_001.fastq.gz,EVA003_S91_L001_R2_001.fastq.gz,,,,,,,,,"xpto, zpto",xpto_1 xpto_1,Illumina,False,xpto,xpto1,xpto2,,xpto4,FastQC-0.11.9; (let's go again),Trimmomatic-0.39; (let's go again)/Trimmomatic-0.39; (let's go againsecond version trimmomatic),Date,1,several_names_test_create_tree_6000
-EVA002_S52,EVA002_S52_L001_R1_001.fastq.gz,EVA002_S52_L001_R2_001.fastq.gz,,,,,,,,,"xpto, zpto",xpto_1 xpto_1,Illumina,False,xpto,xpto1,xpto2,,xpto4,FastQC-0.11.9; (let's go again),Trimmomatic-0.39; (let's go again)/Trimmomatic-0.39; (let's go againsecond version trimmomatic),Date,1,several_names_test_create_tree_6000
-EVA001_S66,EVA001_S66_L001_R1_001.fastq.gz,EVA001_S66_L001_R2_001.fastq.gz,,,,,,,,,"xpto, zpto",xpto_1 xpto_1,Illumina,False,xpto,xpto1,xpto2,xpto3,xpto4,FastQC-0.11.9; (let's go again),Trimmomatic-0.39; (let's go again)/Trimmomatic-0.39; (let's go againsecond version trimmomatic),Date,1,several_names_test_create_tree_6000
+EVA003_S91,EVA003_S91_L001_R1_001.fastq.gz,EVA003_S91_L001_R2_001.fastq.gz,,,,,,,,,"xpto, zpto",xpto_1 xpto_1,Illumina,False,10,5,2,,44,FastQC-0.11.9; (let's go again),Trimmomatic-0.39; (let's go again)/Trimmomatic-0.39; (let's go againsecond version trimmomatic),Date,1,several_names_test_create_tree_6000
+EVA002_S52,EVA002_S52_L001_R1_001.fastq.gz,EVA002_S52_L001_R2_001.fastq.gz,,,,,,,,,"xpto, zpto",xpto_1 xpto_1,Illumina,False,10,5,2,,44,FastQC-0.11.9; (let's go again),Trimmomatic-0.39; (let's go again)/Trimmomatic-0.39; (let's go againsecond version trimmomatic),Date,1,several_names_test_create_tree_6000
+EVA001_S66,EVA001_S66_L001_R1_001.fastq.gz,EVA001_S66_L001_R2_001.fastq.gz,,,,,,,,,"xpto, zpto",xpto_1 xpto_1,Illumina,False,10,5,2,33,44,FastQC-0.11.9; (let's go again),Trimmomatic-0.39; (let's go again)/Trimmomatic-0.39; (let's go againsecond version trimmomatic),Date,1,several_names_test_create_tree_6000
 Total Samples,4