COMPETE

COMPETE: Competitive Occupancy: Multi-factor Profile Evaluation of a Thermodynamic Ensemble.

Installation and manual

See them here.

Version history

Version 0.9.0

Written by Todd Wasson in the Hartemink Group for the following publication:

Wasson, T. and Hartemink, A. J., 2009. An ensemble model of competitive multi-factor binding of the genome. Genome Res., 19(11):2101–2112.

Version 1.0.0

A new feature (position specific concentration) was added (by Jianling Zhong). This version was used in

Zhong, J., Wasson, T., & Hartemink, A. J. (2014). Learning protein–DNA interaction landscapes by integrating experimental data through computational models. Bioinformatics, 30(20), 2868-2874.

License

COMPETE is licensed from Duke University.

Copyright (c) 2009-2020 by Alexander J. Hartemink.

All rights reserved.