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Merge pull request #232 from FlyBase/gene_bracket
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gene with () in it for format testing
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ianlongden authored Apr 10, 2024
2 parents 4cfb3c5 + 8694bd5 commit 1de7912
Showing 1 changed file with 15 additions and 0 deletions.
15 changes: 15 additions & 0 deletions Load/gene_alleles.py
Original file line number Diff line number Diff line change
Expand Up @@ -732,6 +732,19 @@ def create_allele_GA90(cursor, org_dict, feature_id, cvterm_id, db_id, pub_id):
cursor.execute(fpp_sql, (fp_id, pub_id))


def create_bracket_gene(cursor, org_dict, feature_id, cvterm_id, db_id, pub_id):
"""
Create genes/allels with '(' and [}' in them.
This will be used for testing formats allowed etc.
"""
create_gene_alleles(cursor, org_dict, feature_id, cvterm_id, db_id, pub_id,
num_genes=6,
num_alleles=1,
gene_prefix='a(1)48',
tool_prefix=''
)


def create_G1f_gene(cursor, org_dict, feature_id, cvterm_id, db_id, pub_id, dbxref_id):
"""Create gene data for G1f to test merging.
Expand Down Expand Up @@ -997,3 +1010,5 @@ def add_genes_and_alleles(cursor, organism_id, feature_id, cvterm_id, dbxref_id,
create_G1f_gene(cursor, organism_id, feature_id, cvterm_id, db_id, feature_id['Nature_3'], dbxref_id)

create_allele_PDEV_184(cursor, organism_id, feature_id, cvterm_id, db_id, pub_id)

create_bracket_gene(cursor, organism_id, feature_id, cvterm_id, db_id, pub_id)

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