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Merge pull request #231 from FlyBase/pheno_cvterms
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more cv terms needed
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ianlongden authored Apr 9, 2024
2 parents 1800edd + b994621 commit 4cfb3c5
Showing 1 changed file with 5 additions and 3 deletions.
8 changes: 5 additions & 3 deletions data/cv_cvterm.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -10,11 +10,13 @@ SO: ['chromosome_arm', 'chromosome', 'gene', 'mRNA', 'DNA', 'golden_path', 'ncRN
'natural_transposable_element', 'gene_group', 'polypeptide', 'chromosome_breakpoint', 'engineered_plasmid', 'sgRNA',
'oligo', 'engineered_foreign_gene', 'point_mutation', 'cDNA_clone', 'TSS', 'rescue_region', 'insertion_site', 'synthetic_sequence', 'RNA']
molecular_function: ['mRNA binding']
cellular_component: ['nucleolus', 'something' ,'extracellular space', 'endoplasmic reticulum']
cellular_component: ['nucleolus', 'something' ,'extracellular space', 'endoplasmic reticulum',
'mitochondrial crista', 'mitochondrion']
biological_process: ['activation of immune response', 'defense response to other organism', 'rRNA processing']
FlyBase anatomy CV: ['embryo','dopaminergic PAM neuron 1', 'dopaminergic PAM neuron 5', 'dissociated larval fat cell',
'embryonic/larval hemolymph',
'anatomy 1', 'anatomy 2', 'anatomy 3', 'mesoderm']
'anatomy 1', 'anatomy 2', 'anatomy 3', 'mesoderm',
'indirect flight muscle', 'macrochaeta', 'scutellar bristle']
####### End of order matters cv/cvterms

cell_line_cvtermprop type: ['basis']
Expand Down Expand Up @@ -48,7 +50,7 @@ FlyBase miscellaneous CV: [
'contributes_to', 'disease implicated variant', 'evidence_code',
'environ1', 'environ2', 'environ3','environ4', 'environ5', 'faint', 'functional group', 'female',
'in vitro construct - amino acid replacement', 'in vitro construct - coding region fusion',
'in vitro construct - regulatory fusion',
'in vitro construct - regulatory fusion', 'increased number',
'inferred from direct assay', 'inferred from mutant phenotype', 'isolated cells', 'natural population',
'male', 'misc 1', 'misc 2', 'misc 3', 'multi-individual sample',
'pheno1', 'pheno2', 'pheno3', 'pheno4', 'pheno5',
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