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v2.1.0 #246

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merged 3 commits into from
Nov 14, 2021
Merged

v2.1.0 #246

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f2f1df1
fix subsample_reads for controls
leepc12 Nov 12, 2021
7e38dcd
bump ver
leepc12 Nov 12, 2021
e0c687e
Merge pull request #245 from ENCODE-DCC/PIP-1641_fix_subsample_reads
leepc12 Nov 12, 2021
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14 changes: 7 additions & 7 deletions chip.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -7,10 +7,10 @@ struct RuntimeEnvironment {
}

workflow chip {
String pipeline_ver = 'v2.0.1'
String pipeline_ver = 'v2.1.0'

meta {
version: 'v2.0.1'
version: 'v2.1.0'

author: 'Jin wook Lee'
email: '[email protected]'
Expand All @@ -19,8 +19,8 @@ workflow chip {

specification_document: 'https://docs.google.com/document/d/1lG_Rd7fnYgRpSIqrIfuVlAz2dW1VaSQThzk836Db99c/edit?usp=sharing'

default_docker: 'encodedcc/chip-seq-pipeline:v2.0.1'
default_singularity: 'library://leepc12/default/chip-seq-pipeline:v2.0.1'
default_docker: 'encodedcc/chip-seq-pipeline:v2.1.0'
default_singularity: 'library://leepc12/default/chip-seq-pipeline:v2.1.0'
croo_out_def: 'https://storage.googleapis.com/encode-pipeline-output-definition/chip.croo.v5.json'

parameter_group: {
Expand Down Expand Up @@ -71,8 +71,8 @@ workflow chip {
}
input {
# group: runtime_environment
String docker = 'encodedcc/chip-seq-pipeline:v2.0.1'
String singularity = 'library://leepc12/default/chip-seq-pipeline:v2.0.1'
String docker = 'encodedcc/chip-seq-pipeline:v2.1.0'
String singularity = 'library://leepc12/default/chip-seq-pipeline:v2.1.0'
String conda = 'encode-chip-seq-pipeline'
String conda_macs2 = 'encode-chip-seq-pipeline-macs2'
String conda_spp = 'encode-chip-seq-pipeline-spp'
Expand Down Expand Up @@ -1564,7 +1564,7 @@ workflow chip {
if ( has_input_of_bam2ta_ctl && !has_output_of_bam2ta_ctl ) {
call bam2ta as bam2ta_ctl { input :
bam = ctl_nodup_bam_,
subsample = subsample_reads,
subsample = ctl_subsample_reads,
paired_end = ctl_paired_end_,
mito_chr_name = mito_chr_name_,

Expand Down