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Issues list

Problem with running install_conda_env.sh
#105 opened Nov 12, 2019 by pangwopi
10
SGE qsub not requesting enough virtual memory to initialize Java virtual machine
#132 opened Mar 2, 2020 by xiaofanjin
4
spp. chip.call_peak RetryableFailure
#133 opened Mar 2, 2020 by yatianyang2019
8
custom aligner option disappeared in v1.5.0
#170 opened Jul 2, 2020 by Flowdihow
4
Warning occurred when running the qc2tsv under python3.7
#174 opened Jul 14, 2020 by rongxinzh
3
Failed to connect cromwell server.. unsupported backened: sge
#200 opened Nov 18, 2020 by ambeys
3
BUG: dim(X) must have a positive length
#203 opened Dec 10, 2020 by YogiOnBioinformatics
10
Peak calling parameter chip.fdr_thresh never changes from default 0.01
#204 opened Dec 11, 2020 by alexadowdell
13
STDERR=zcat: can't stat: error on a MacOSX computer
#205 opened Dec 27, 2020 by DebbieCG
macs2 q-value
#206 opened Jan 3, 2021 by User-yx
1
broad peak
#207 opened Jan 18, 2021 by User-yx
1
Call-qc failed due an error
#212 opened Feb 17, 2021 by andrewucla
2
Output from the successfull run
#217 opened Mar 3, 2021 by Hemantcnaik
1
Redundant computation - unneccesary "trimfastq.py" step?
#218 opened Mar 22, 2021 by jmfrank
4
Fail at chip.call_peak_ppr1 step
#219 opened Mar 24, 2021 by huynhvietlinh
3
Compatible with NChIP?
#222 opened Mar 30, 2021 by YogiOnBioinformatics
2
Pipeline on GCP fails with "Error: pipeline dependencies not found"
#224 opened Apr 6, 2021 by amtseng
9
Pipeline hangs on: "undefined symbol: JLI_InitArgProcessing" and "task=chip.read_genome_tsv:-1, retry=0, status=WaitingForReturnCode"
#225 opened Apr 8, 2021 by neekonsu
7
Error in chip.align tasks (Failed to evaluate job outputs)
#226 opened Apr 13, 2021 by sqreb
5
Example JSON not working
#235 opened Aug 31, 2021 by lcamillo
@leepc12
3
Can I run chip-seq-pipeline without input files?
#236 opened Sep 2, 2021 by Reemann
3
inquiry about reproducibility results
#237 opened Sep 11, 2021 by monnneee
Failed to evaluate input error when running pipeline
#238 opened Oct 1, 2021 by kmualim
3
Job chip.spp_pooled:NA:1 exited with return code 1
#249 opened Nov 17, 2021 by jkanbar
pipeline fails trying to connect to auth.docker.io
#256 opened Jan 10, 2022 by GodloveD
8
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