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Output from the successfull run #217

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Hemantcnaik opened this issue Mar 3, 2021 · 1 comment
Open

Output from the successfull run #217

Hemantcnaik opened this issue Mar 3, 2021 · 1 comment

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@Hemantcnaik
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Hemantcnaik commented Mar 3, 2021 •
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Hello I have run the example file from the pipeline, I can found the output generated but has so many folders is it I have to go through all the folder and see the result or is there any option to get one consolidated result.

command I have run in my local system with 64 GB ram 12 core

caper run chip.wdl -i example_input_json/ENCSR936XTK_subsampled_chr19_only.json

2021-03-03 14:30:37,801|caper.cromwell_metadata|INFO| Wrote metadata file. /media/chip-seq-pipeline2/chip/be3cf77a-2a5f-4b85-b477-5a6f5fdcd8ca/metadata.json
2021-03-03 14:30:37,801|caper.nb_subproc_thread|INFO| Cromwell finished successfully.

please help me how to see the result file

Thank you
@Hemantcnaik Hemantcnaik changed the title Output from the sucessful run Output from the successfull run Mar 3, 2021
@leepc12
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leepc12 commented Mar 4, 2021

Please use Croo to organize outputs. Pick that metadata.json file and run croo metadata.json on a folder you want to organize outputs. Please find details on Croo's github README.

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@leepc12 @Hemantcnaik