ChimPipe version 0.9.4

Bug fixes

• Check gene_id instead of gene_name to decide associating a gene to the exon.
  gene_name info not always available leading to problems.
• Replace gff by bed files for intersecting aligments with the annotated exons. Bed files are better supported by bedtool developers than gff.

Documentation

• Documentation update
• Chimpipe 0.9.4 manual pdf