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Rc/0.4.0 #68

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merged 5 commits into from
Dec 18, 2024
Merged

Rc/0.4.0 #68

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0a1666e
Update pyproject to enable optional dependencies.
morriscb Dec 10, 2024
2e61e4c
Merge branch 'u/morriscb/separateDependencies' into rc/0.4.0
morriscb Dec 11, 2024
4463203
Add aging dataset.
morriscb Oct 23, 2024
ad783ee
Merge branch 'u/morriscb/agingMouse' into rc/0.4.0
morriscb Dec 17, 2024
474f8b8
Fixup typos.
morriscb Dec 18, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/abc_atlas_access_ci.yaml
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Expand Up @@ -21,6 +21,6 @@ jobs:
- name: Install
run: |
python -m pip install --upgrade pip
pip install .
pip install ".[test]"
- name: Test
run: pytest tests
4 changes: 2 additions & 2 deletions .github/workflows/deploy_book.yaml
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Expand Up @@ -4,7 +4,7 @@ name: deploy-book
on:
push:
branches:
- main
- main

# This job installs dependencies, builds the book, and pushes it to `gh-pages`
jobs:
Expand All @@ -21,7 +21,7 @@ jobs:

- name: Install dependencies
run: |
pip install -r requirements.txt
pip install ".[jupyter-book]"

# Build the book
- name: Build the book
Expand Down
22 changes: 21 additions & 1 deletion README.md
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Expand Up @@ -19,10 +19,30 @@ Note: for scientific questions regarding the data this repository is accessing,
please use the
[Allen Institute's community forum](https://community.brain-map.org/).
If you are having an issue with the code or notebooks not running properly
please open an issue on this Github respoitory. However, please see below.
please open an issue on this Github repository. However, please see below.

## Level of support
We are not currently supporting this code, but simply releasing it to the
community AS IS but are not able to provide any guarantees of support. The
community is welcome to submit issues, but you should not expect an active
response.

## Installation

To install base package with the cache object in your python environment, use
pip with the following command:

```console
pip install git+https://github.com/alleninstitute/abc_atlas_access.git
```

To install the package with all optional dependencies, specifically those needed
to re-run the notebooks, you can use the following command:

```console
pip install "abc_atlas_access[notebooks] @ git+https://github.com/alleninstitute/abc_atlas_access.git"
```

We assume that you already have Jupyter installed if you are re-running the
notebooks. Running the [getting_started notebook](https://alleninstitute.github.io/abc_atlas_access/notebooks/getting_started.html)
will also help you install the package.
119 changes: 119 additions & 0 deletions _static/WMB-taxonomy/20231215/class.html
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<html>
<head><title>WMB-taxonmy: cell type classes</title></head>
<link rel="stylesheet" type="text/css" href="../../simple_style.css"/>
<body>
<table border="1" class="dataframe mystyle">
<thead>
<tr style="text-align: right;">
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</html>.

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